The graph becomes useful. Before this commit, entities sat in the DB
as data with no narrative. After: the director can ask "what am I
forgetting?" and get a structured answer in milliseconds.
New module (src/atocore/engineering/queries.py, 360 lines):
Structure queries (Q-001/004/005/008/013):
- system_map(project): full subsystem → component tree + orphans +
materials joined per component
- decisions_affecting(project, subsystem_id?): decisions linked via
AFFECTED_BY_DECISION, scoped to a subsystem or whole project
- requirements_for(component_id): Q-005 forward trace
- recent_changes(project, since, limit): Q-013 via memory_audit join
(reuses the Phase 4 audit infrastructure — entity_kind='entity')
The 3 killer queries (the real value):
- orphan_requirements(project): requirements with NO inbound SATISFIES
edge. "What do I claim the system must do that nothing actually
claims to handle?" Q-006.
- risky_decisions(project): decisions whose BASED_ON_ASSUMPTION edge
points to an assumption with status in ('superseded','invalid') OR
properties.flagged=True. Finds cascading risk from shaky premises. Q-009.
- unsupported_claims(project): ValidationClaim entities with no inbound
SUPPORTS edge — asserted but no Result to back them. Q-011.
- all_gaps(project): runs all three in one call for dashboards.
History + impact (Q-016/017):
- impact_analysis(entity_id, max_depth=3): BFS over outbound edges.
"What's downstream of this if I change it?"
- evidence_chain(entity_id): inbound SUPPORTS/EVIDENCED_BY/DESCRIBED_BY/
VALIDATED_BY/ANALYZED_BY. "How do I know this is true?"
API (src/atocore/api/routes.py) exposes 10 endpoints:
- GET /engineering/projects/{p}/systems
- GET /engineering/decisions?project=&subsystem=
- GET /engineering/components/{id}/requirements
- GET /engineering/changes?project=&since=&limit=
- GET /engineering/gaps/orphan-requirements?project=
- GET /engineering/gaps/risky-decisions?project=
- GET /engineering/gaps/unsupported-claims?project=
- GET /engineering/gaps?project= (combined)
- GET /engineering/impact?entity=&max_depth=
- GET /engineering/evidence?entity=
Mirror integration (src/atocore/engineering/mirror.py):
- New _gaps_section() renders at top of every project page
- If any gap non-empty: shows up-to-10 per category with names + context
- Clean project: "✅ No gaps detected" — signals everything is traced
Triage UI (src/atocore/engineering/triage_ui.py):
- /admin/triage now shows BOTH memory candidates AND entity candidates
- Entity cards: name, type, project, confidence, source provenance,
Promote/Reject buttons, link to wiki entity page
- Entity promote/reject via fetch to /entities/{id}/promote|reject
- One triage UI for the whole pipeline — consistent muscle memory
Tests: 326 → 341 (15 new, all in test_engineering_queries.py):
- System map structure + orphan detection + material joins
- Killer queries: positive + negative cases (empty when clean)
- Decisions query: project-wide and subsystem-scoped
- Impact analysis walks outbound BFS
- Evidence chain walks inbound provenance
No regressions. All 10 daily queries from the plan are now live and
answering real questions against the graph.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Three additive upgrades borrowed from Karpathy's LLM Wiki pattern:
1. CONTRADICTION DETECTION: auto-triage now has a fourth verdict —
"contradicts". When a candidate conflicts with an existing memory
(not duplicates, genuine disagreement like "Option A selected"
vs "Option B selected"), the triage model flags it and leaves
it in the queue for human review instead of silently rejecting
or double-storing. Preserves source tension rather than
suppressing it.
2. WEEKLY LINT PASS: scripts/lint_knowledge_base.py checks for:
- Orphan memories (active but zero references after 14 days)
- Stale candidates (>7 days unreviewed)
- Unused entities (no relationships)
- Empty-state projects
- Unregistered projects auto-detected in memories
Runs Sundays via the cron. Outputs a report.
3. WEEKLY SYNTHESIS: scripts/synthesize_projects.py uses sonnet to
generate a 3-5 sentence "current state" paragraph per project
from state + memories + entities. Cached in project_state under
status/synthesis_cache. Wiki project pages now show this at the
top under "Current State (auto-synthesis)". Falls back to a
deterministic summary if no cache exists.
deploy/dalidou/batch-extract.sh: added Step C (synthesis) and
Step D (lint) gated to Sundays via date check.
All additive — nothing existing changes behavior. The database
remains the source of truth; these operations just produce better
synthesized views and catch rot.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Layer 3 of the AtoCore architecture. Generates a human-readable
project overview in markdown from structured data:
- Trusted Project State (by category)
- System Architecture (systems → subsystems → components with
material and interface links)
- Decisions (with affected entities)
- Requirements & Constraints
- Materials
- Vendors
- Active Memories (with confidence and reference counts)
The mirror is DERIVED — every line traces back to an entity, state
entry, or memory. The footer stamps the generation timestamp and
the "not canonical truth" disclaimer.
API: GET /projects/{project_name}/mirror returns {project, format,
content} where content is the full markdown page. Supports project
aliases via resolve_project_name.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
