{
  "permissions": {
    "allow": [
      "Bash(dir:*)",
      "Bash(sqlite3:*)",
      "Bash(timeout /t 30 /nobreak)",
      "Bash(npm install:*)",
      "Bash(git add:*)",
      "Bash(git commit:*)",
      "Bash(git push:*)",
      "Bash(python:*)",
      "Bash(conda activate:*)",
      "Bash(C:/Users/Antoine/miniconda3/envs/atomizer/python.exe:*)",
      "Bash(cat:*)",
      "Bash(C:UsersAntoineminiconda3envsatomizerpython.exe run_adaptive_mirror_optimization.py --fea-budget 100 --batch-size 5 --strategy hybrid)",
      "Bash(/c/Users/Antoine/miniconda3/envs/atomizer/python.exe:*)",
      "Bash(npm run build:*)",
      "Bash(npm uninstall:*)",
      "Bash(netstat:*)",
      "Bash(findstr:*)",
      "Bash(curl:*)",
      "Bash(npx tsc:*)",
      "Bash(atomizer-dashboard/README.md )",
      "Bash(atomizer-dashboard/backend/api/main.py )",
      "Bash(atomizer-dashboard/backend/api/routes/optimization.py )",
      "Bash(atomizer-dashboard/backend/api/routes/claude.py )",
      "Bash(atomizer-dashboard/backend/api/routes/terminal.py )",
      "Bash(atomizer-dashboard/backend/api/services/ )",
      "Bash(atomizer-dashboard/backend/requirements.txt )",
      "Bash(atomizer-dashboard/frontend/package.json )",
      "Bash(atomizer-dashboard/frontend/package-lock.json )",
      "Bash(atomizer-dashboard/frontend/src/components/ClaudeChat.tsx )",
      "Bash(atomizer-dashboard/frontend/src/components/ClaudeTerminal.tsx )",
      "Bash(atomizer-dashboard/frontend/src/components/dashboard/ControlPanel.tsx )",
      "Bash(atomizer-dashboard/frontend/src/pages/Dashboard.tsx )",
      "Bash(atomizer-dashboard/frontend/src/context/ )",
      "Bash(atomizer-dashboard/frontend/src/pages/Home.tsx )",
      "Bash(atomizer-dashboard/frontend/src/App.tsx )",
      "Bash(atomizer-dashboard/frontend/src/api/client.ts )",
      "Bash(atomizer-dashboard/frontend/src/components/layout/Sidebar.tsx )",
      "Bash(atomizer-dashboard/frontend/src/index.css )",
      "Bash(atomizer-dashboard/frontend/src/pages/Results.tsx )",
      "Bash(atomizer-dashboard/frontend/tailwind.config.js )",
      "Bash(docs/07_DEVELOPMENT/DASHBOARD_IMPROVEMENT_PLAN.md)",
      "Bash(taskkill:*)",
      "Bash(xargs:*)",
      "Bash(cmd.exe /c:*)",
      "Bash(powershell.exe -Command:*)",
      "Bash(where:*)",
      "Bash(type %USERPROFILE%.claude*)",
      "Bash(conda create:*)",
      "Bash(cmd /c \"conda create -n atomizer python=3.10 -y\")",
      "Bash(cmd /c \"where conda\")",
      "Bash(cmd /c \"dir /b C:\\Users\\antoi\\anaconda3\\Scripts\\conda.exe 2>nul || dir /b C:\\Users\\antoi\\miniconda3\\Scripts\\conda.exe 2>nul || dir /b C:\\ProgramData\\anaconda3\\Scripts\\conda.exe 2>nul || dir /b C:\\ProgramData\\miniconda3\\Scripts\\conda.exe 2>nul || echo NOT_FOUND\")",
      "Bash(cmd /c \"if exist C:\\Users\\antoi\\anaconda3\\Scripts\\conda.exe (echo FOUND: anaconda3) else if exist C:\\Users\\antoi\\miniconda3\\Scripts\\conda.exe (echo FOUND: miniconda3) else if exist C:\\ProgramData\\anaconda3\\Scripts\\conda.exe (echo FOUND: ProgramData\\anaconda3) else (echo NOT_FOUND)\")",
      "Bash(powershell:*)",
      "Bash(C:Usersantoianaconda3Scriptsconda.exe create -n atomizer python=3.10 -y)",
      "Bash(cmd /c \"C:\\Users\\antoi\\anaconda3\\Scripts\\conda.exe create -n atomizer python=3.10 -y\")",
      "Bash(cmd /c \"set SPLM_LICENSE_SERVER=28000@dalidou;28000@100.80.199.40 && \"\"C:\\Program Files\\Siemens\\DesigncenterNX2512\\NXBIN\\run_journal.exe\"\" \"\"C:\\Users\\antoi\\Atomizer\\optimization_engine\\solve_simulation.py\"\" -args \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_adaptive_V15\\2_iterations\\iter2\\ASSY_M1_assyfem1_sim1.sim\"\" \"\"Solution 1\"\" 2>&1\")",
      "Bash(cmd /c \"set SPLM_LICENSE_SERVER=28000@dalidou;28000@100.80.199.40 && \"C:Program FilesSiemensDesigncenterNX2512NXBINrun_journal.exe\" \"C:UsersantoiAtomizernx_journalsextract_part_mass_material.py\" -args \"C:UsersantoiAtomizerstudiesm1_mirror_cost_reduction1_setupmodelM1_Blank.prt\" \"C:UsersantoiAtomizerstudiesm1_mirror_cost_reduction1_setupmodel\" 2>&1\")",
      "Bash(npm run dev:*)",
      "Bash(cmd /c \"cd /d C:\\Users\\antoi\\Atomizer\\atomizer-dashboard\\frontend && npm run dev\")",
      "Bash(cmd /c \"cd /d C:\\Users\\antoi\\Atomizer\\atomizer-dashboard\\frontend && dir package.json && npm --version\")",
      "Bash(cmd /c \"set SPLM_LICENSE_SERVER=28000@dalidou;28000@100.80.199.40 && \"\"C:\\Program Files\\Siemens\\DesigncenterNX2512\\NXBIN\\run_journal.exe\"\" \"\"C:\\Users\\antoi\\Atomizer\\nx_journals\\extract_part_mass_material.py\"\" -args \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\\M1_Blank.prt\"\" \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\"\" 2>&1\")",
      "Bash(cmd /c \"set SPLM_LICENSE_SERVER=28000@dalidou;28000@100.80.199.40 && \"\"C:\\Program Files\\Siemens\\DesigncenterNX2512\\NXBIN\\run_journal.exe\"\" \"\"C:\\Users\\antoi\\Atomizer\\nx_journals\\extract_expressions.py\"\" -args \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\\M1_Blank.prt\"\" \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\"\" 2>&1\")",
      "Bash(cmd /c \"set SPLM_LICENSE_SERVER=28000@dalidou;28000@100.80.199.40 && \"\"C:\\Program Files\\Siemens\\DesigncenterNX2512\\NXBIN\\run_journal.exe\"\" \"\"C:\\Users\\antoi\\Atomizer\\nx_journals\\extract_expressions.py\"\" -args \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\\M1_Blank.prt\"\" \"\"C:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_cost_reduction\\1_setup\\model\"\"\")",
      "Bash(cmd /c:*)",
      "Bash(taskkill /F /FI \"WINDOWTITLE eq *uvicorn*\")",
      "Bash(python -m uvicorn:*)",
      "Bash(conda run:*)",
      "Bash(/c/Users/antoi/miniconda3/envs/atomizer/python.exe -m uvicorn:*)",
      "Bash(/c/Users/antoi/anaconda3/envs/atomizer/python.exe -m uvicorn:*)",
      "Bash(/c/Users/antoi/anaconda3/envs/atomizer/python.exe:*)",
      "Bash(tasklist:*)",
      "Bash(wmic process where \"ProcessId=147068\" delete)",
      "Bash(cmd.exe //c \"taskkill /F /PID 147068\")",
      "Bash(pip show:*)",
      "Bash(python3:*)",
      "Bash(python extract_all_mirror_data.py:*)",
      "Bash(C:Usersantoiminiconda3envsatomizerpython.exe extract_all_mirror_data.py)",
      "Bash(/c/Users/antoi/miniconda3/envs/atomizer/python.exe:*)",
      "Bash(grep:*)",
      "Bash(python -c:*)",
      "Bash(C:Usersantoianaconda3envsatomizerpython.exe -c \"\nimport pandas as pd\ndf = pd.read_csv(r''c:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_all_trials_export.csv'')\n\n# Check which columns have data\nprint(''=== Column data availability ==='')\nfor col in df.columns:\n    non_null = df[col].notna().sum()\n    print(f''{col}: {non_null}/{len(df)} ({100*non_null/len(df):.1f}%)'')\n\nprint(''\\n=== Studies in dataset ==='')\nprint(df[''study''].value_counts())\n\")",
      "Bash(cmd /c \"C:\\Users\\antoi\\anaconda3\\envs\\atomizer\\python.exe -c \"\"import pandas as pd; df = pd.read_csv(r''c:\\Users\\antoi\\Atomizer\\studies\\m1_mirror_all_trials_export.csv''); print(''Rows:'', len(df)); print(df.columns.tolist())\"\"\")",
      "Bash(robocopy:*)",
      "Bash(xcopy:*)",
      "Bash(ls:*)",
      "Bash(dir \"c:\\Users\\antoi\\Atomizer\\studies\\*.png\")",
      "Bash(powershell -Command \"Get-Process | Where-Object { $_Modules.FileName -like ''*study.db*'' } | Select-Object Id, ProcessName\")",
      "Bash(powershell -Command:*)",
      "Bash(C:/Users/antoi/miniconda3/envs/atomizer/python.exe -m uvicorn:*)",
      "Bash(dir /s /b \"C:\\Users\\antoi\\*conda*\")",
      "Bash(conda run -n atomizer python:*)",
      "Bash(C:/ProgramData/anaconda3/condabin/conda.bat run -n atomizer python -c \"\nimport sqlite3\n\ndb_path = ''studies/M1_Mirror/m1_mirror_cost_reduction_V6/3_results/study.db''\nconn = sqlite3.connect(db_path)\ncursor = conn.cursor()\n\n# Get counts\ncursor.execute(''SELECT COUNT(*) FROM trials'')\ntotal = cursor.fetchone()[0]\n\ncursor.execute(\"\"SELECT COUNT(*) FROM trials WHERE state = ''COMPLETE''\"\")\ncomplete = cursor.fetchone()[0]\n\nprint(f''=== V6 Study Status ==='')\nprint(f''Total trials: {total}'')\nprint(f''Completed: {complete}'')\nprint(f''Failed/Pruned: {total - complete}'')\nprint(f''Progress: {complete}/200 ({100*complete/200:.1f}%)'')\n\n# Get objectives stats\nobjs = [''rel_filtered_rms_40_vs_20'', ''rel_filtered_rms_60_vs_20'', ''mfg_90_optician_workload'', ''mass_kg'']\nprint(f''\\n=== Objectives Stats ==='')\nfor obj in objs:\n    cursor.execute(f\"\"SELECT MIN({obj}), MAX({obj}), AVG({obj}) FROM trials WHERE state = ''COMPLETE'' AND {obj} IS NOT NULL\"\")\n    result = cursor.fetchone()\n    if result and result[0] is not None:\n        print(f''{obj}: min={result[0]:.4f}, max={result[1]:.4f}, mean={result[2]:.4f}'')\n\n# Design variables stats  \ndvs = [''whiffle_min'', ''whiffle_outer_to_vertical'', ''whiffle_triangle_closeness'', ''blank_backface_angle'', ''Pocket_Radius'']\nprint(f''\\n=== Design Variables Explored ==='')\nfor dv in dvs:\n    try:\n        cursor.execute(f\"\"SELECT MIN({dv}), MAX({dv}), AVG({dv}) FROM trials WHERE state = ''COMPLETE''\"\")\n        result = cursor.fetchone()\n        if result and result[0] is not None:\n            print(f''{dv}: min={result[0]:.3f}, max={result[1]:.3f}, mean={result[2]:.3f}'')\n    except Exception as e:\n        print(f''{dv}: error - {e}'')\n\nconn.close()\n\")",
      "Bash(/c/Users/antoi/anaconda3/python.exe:*)",
      "Bash(C:UsersantoiAtomizertemp_extract.bat)",
      "Bash(dir /b \"C:\\Users\\antoi\\Atomizer\\knowledge_base\\lac\")",
      "Bash(pip install:*)",
      "Bash(dir \"C:\\Users\\antoi\\Atomizer\\studies\\M1_Mirror\\m1_mirror_cost_reduction_V7\\3_results\")",
      "Bash(call \"%USERPROFILE%\\anaconda3\\Scripts\\activate.bat\" atomizer)",
      "Bash(cmd /c \"cd /d c:\\Users\\antoi\\Atomizer && call %USERPROFILE%\\anaconda3\\Scripts\\activate.bat atomizer && python -c \"\"import sys; sys.path.insert(0, ''.''); from optimization_engine.extractors import ZernikeExtractor; print(''OK''); import inspect; print(inspect.signature(ZernikeExtractor.extract_relative))\"\"\")",
      "Bash(cmd /c \"cd /d c:\\Users\\antoi\\Atomizer && c:\\Users\\antoi\\anaconda3\\envs\\atomizer\\python.exe -c \"\"import sys; sys.path.insert(0, ''.''); from optimization_engine.extractors import ZernikeExtractor; print(''Import OK''); import inspect; sig = inspect.signature(ZernikeExtractor.extract_relative); print(''Signature:'', sig)\"\"\")",
      "Bash(c:Usersantoianaconda3envsatomizerpython.exe c:UsersantoiAtomizertoolstest_zernike_import.py)",
      "Bash(dir \"C:\\Users\\antoi\\Atomizer\\studies\\M1_Mirror\\m1_mirror_cost_reduction_V7\\3_results\\best_design_archive\")",
      "Bash(dir \"C:\\Users\\antoi\\Atomizer\\studies\\M1_Mirror\\m1_mirror_cost_reduction_V7\\3_results\\best_design_archive\\20251220_010128\")",
      "Bash(dir /s /b \"C:\\Users\\antoi\\Atomizer\\studies\\M1_Mirror\\m1_mirror_cost_reduction_V8\")",
      "Bash(c:/Users/antoi/anaconda3/envs/atomizer/python.exe:*)"
    ],
    "deny": [],
    "ask": []
  }
}
