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Atomizer/studies/simple_beam_optimization/1_setup/model/Beam.prt

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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
    

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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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CategoryMETAL SubCategoryCarbon Steel Version6.0 Description$ElasticDependencyControlReferenceFrequency<19><>G<EFBFBD>b<00>MassDensityConstant!<00>KMassDensityTemperature!<00>MassDensityFrequency!<00> CalculateConstantValuesFreqDep;Calculate Constant Values from Frequency Dependent Fields CalculateConstantValuesTempDep=Calculate Constant Values from Temperature Dependent FieldsYoungsModulusConstant!<00>JYoungsModulusTemperature!<00>YoungsModulusFrequency!<00>PoissonsRatioTypePoissonsRatioConstant!<00>IPoissonsRatioTemperature!<00>PoissonsRatioFrequency!<00>ShearModulusConstant!<00>HShearModulusTemperature!<00>ShearModulusFrequency!<00>StructuralDampingConstant!<00>GStructuralDampingTemperature!<00>StructuralDampingFrequency!<00>MatlNonlinearityTypeYieldFunctionCriterionCompressiveTensileyieldRatio<19>P<14><><EFBFBD>InitialTensilYieldStress2<19><>G<EFBFBD>b<00>InitialTensilYieldStress3<19><>G<EFBFBD>b<00>ShearYieldStress<19><>G<EFBFBD>b<00>ShearYieldStress2<19><>G<EFBFBD>b<00>ShearYieldStress3<19><>G<EFBFBD>b<00>HardeningRule HillRatio11!<00>F HillRatio22!<00>E HillRatio33!<00>D HillRatio12!<00>C HillRatio23!<00>B HillRatio13!<00>AMixedHardeningRatio<19><03>KinematicLawsNonLinearHardeningCoefficient!<00>@StressStrainFormatTypeStressStrainDataTypeStressStrainCurveTable!<00>WorkHardeningSlopeH<19><>G<EFBFBD>b<00>StressStrainCurveStrainRate!<00>InitialYieldPoint<19><>G<EFBFBD>b<00>InitialFrictionAngle<19><>G<EFBFBD>b<00><>TangentModulusE<19><00>TangentModulusETemperature!<00>?StrainRatedependencyStressStrainCurve2!<00>ExponentBValue<19><>G<EFBFBD>b<00>StrainRateLevel<19><>G<EFBFBD>b<00>LSDYNAPlasticfailLSDYNA_matusr_24_fail<19><>k<1A><><EFBFBD><EFBFBD>P<EFBFBD>LSDYNA_fail_plastic_strain<19>4k<1A><><EFBFBD><EFBFBD>P<EFBFBD> EPSThin<19><00>EPSMaj<19><00>EffectivePlasticStrainFS<19>45<34>x<><78>@<40>FormulationVPYieldSressScalingCurve!<00>PlasticHardeningModulus<19><00>EffectiveFailurePlasticStrain<19><00>LSDYNAPlasticPolymerfailEFTXStiffnessDampingRatioDAMP<19><00>FilteringFactorRFAC<19><00>$FailureStrainToStrainRateCurveLCID!<00>&FailureStrainToStrainRateCurveLCTSRF!<00>RTCLDamageEPS0OptionRTCLDamageEPS0<19><00> TransverseShearCompositeDamage<19>P <0C>̓EffectiveFailureStrain<19><>G<EFBFBD>b<00>DamageInitiation<19><>G<EFBFBD>b<00>FinalRupture<19><>G<EFBFBD>b<00>StressStrainCurveCompression!<00>StressStrainCurveTraction!<00>PoissonsRatioPlastic!<00>>Y0InitialStress!<00>=IsotropicSaturatedOption IsotropicSaturatedSeries(!<00><!<00>;ChabocheKinematicHardening(!<00>:!<00>9AxialDampingFactor!<00>8BendingDampingFactor!<00>7 MartensiteA<19><>G<EFBFBD>b<00> MartensiteB<19><>G<EFBFBD>b<00> MartensiteC<19><>G<EFBFBD>b<00> MartensiteD<19><>G<EFBFBD>b<00> MartensiteP<19><>G<EFBFBD>b<00> MartensiteQ<19><>G<EFBFBD>b<00> MartensiteE0<19><>G<EFBFBD>b<00>MartensiteVM0!<00>6HardeningAHS<19><>G<EFBFBD>b<00>HardeningBHS<19><>G<EFBFBD>b<00> HardeningM<19><>G<EFBFBD>b<00> HardeningN<19><>G<EFBFBD>b<00>HardeningEPS0<19><>G<EFBFBD>b<00>HardeningHMART<19><>G<EFBFBD>b<00> HardeningK1<19><>G<EFBFBD>b<00> HardeningK2<19><>G<EFBFBD>b<00>!PlasticHardeningModulusLaminate<19><>G<EFBFBD>b<00>PlasticStrainFailureGlass<19><>G<EFBFBD>b<00>AnsysStaticRecoveryCoeff!<00>5%AnsysStaticRecoveryCoeffTemperature!<00>AnsysTemperatureCoeff!<00>4"AnsysTemperatureCoeffTemperature!<00>AnsysRecoveryThreshold!<00>3#AnsysRecoveryThresholdTemperature!<00>BKINStressStrainOptionKINHStressStrainOption+ChabocheNonlinearKinematicHardeningOption%Chab
TestTypeSurvivalProbability!<00> TSigma90-10!<00>EnduranceLimitOptionNumberCycles!<00>StressAmplitude!<00>StrainAmplitude!<00>WorkHardening<19><>G<EFBFBD>b<00>FormingLimit!<00>PlasticStrainRatio<19><>G<EFBFBD>b<00>InitialStrain!<00>HardeningExponent!<00>StrengthCoefficient!<00>AnisotropyCoefficientR0!<00> AnisotropyCoefficientR45!<00> AnisotropyCoefficientR90!<00> SIStockBendRadii'<00>EnglishStockBendRadii'<00> RefTemp<19><>G<EFBFBD>b<00> !ThermalExpansionCoefficientTypeThermalExpansionConstant!<00>
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IronLoss(!<00><>!<00><>!<00><>CalculateSteinmetz"Calculate Steinmetz CoefficientsSteinmetzCoefficients'<00>JilesAthertonScenarioSpecifyCoercivity  Coercivity!<00><>SpecifyRemanence HystersisRemanence!<00><>BHLoop(!<00><>!<00><>#CalculateJiles-AthertonParameters%Calculate Jiles-Atherton ParametersJilesAthertonParameters'<00> magneticRadiantPlasmaFrequency!<00><>magneticCollisionFrequency!<00><>magneticResonantFrequency!<00><>MagneticDampingCoeff!<00><>magneticPoles(!<00><>!<00><>!<00><>StrainBCurve!<00>CreepFormulationCreepReferenceTemperature<19><00> TempDependTermTypeCreepTemperatureDependence!<00><>"CreepTemperatureDependenceDeltaH<19><>G<EFBFBD>b<00><>CreepThreshold<19>/<04><><EFBFBD><EFBFBD>h<EFBFBD><68>CreepThresholdVPlas<19><>G<EFBFBD>b<00>CreepHardeningAnisotropicTypeCreepHillRatio11!<00><>CreepHillRatio22!<00><>CreepHillRatio33!<00><>CreepHillRatio12!<00><>CreepHillRatio23!<00><>CreepHillRatio13!<00><>CheckUnitSystemForceLengthMassUnitsPowerLawCreepParameter_A!<00><>PowerLawCreepParameter_n!<00><>PowerLawCreepParameter_m!<00><>TimeHardeningC4MethodTimeHardeningC4!<00><>PowerLawCreepParameter_A1!<00><>PowerLawCreepParameter_b!<00><>PowerLawCreepParameter_d!<00><>KelvinMaxwellC1FunctionKelvinMaxwellCreepParameter_a!<00><>KelvinMaxwellCreepParameter_b!<00><>KelvinMaxwellC2FunctionKelvinMaxwellCreepParameter_c!<00><>KelvinMaxwellCreepParameter_d!<00><>&GeneralizedBlackburnCreepParameter_x!<00><>KelvinMaxwellC3FunctionKelvinMaxwellCreepParameter_e!<00><>KelvinMaxwellCreepParameter_f!<00><>KelvinMaxwellCreepParameter_g!<00><>PrimarySpringCreepTable_Kp!<00>PrimaryDampingCreepTable_Cp!<00>SecondaryDampingCreepTable_Cs!<00>RateStrainFactorC1!<00><>MainFactorC1Norton!<00><>MainFactorC1Garafalo!<00><> MainFactorA!<00><>StressPowerExponentC2!<00><>StressPowerExponentC2Garafalo!<00><>StrainPowerExponentC3!<00><>ExponentialFactorC4!<00><>StressPowerExponentB!<00><>TimePowerExponentD!<00><>AnsysUserCreepTable(!<00><>ViscoelasticDomainViscoelasticTypeViscoelasticType2ViscoelasticTimeDefnTimeErrorTolerance<19>/<2F>z<EFBFBD>G<EFBFBD>{<7B>
TimeNMax)ViscoelasticTimeDefnCreepTestDataFormat)ViscoelasticTimeDefnRelaxTestDataFormat#TimeDomainLongTermShearCompliance<19><>G<EFBFBD>b<00>"TimeDomainLongTermBulkCompliance<19><>G<EFBFBD>b<00>#TimeDomainLongTermShearRelaxation<19><>G<EFBFBD>b<00>"TimeDomainLongTermBulkRelaxation<19><>G<EFBFBD>b<00>TimeNormalizedShearCompliance'<00>TimeNormalizedBulkCompliance'<00>TimeShearBulkComplianceData'<00>TimeNormalizedShearRelaxation'<00>TimeNormalizedBulkRelaxation'<00>TimeShearBulkRelaxationData'<00>!ViscoelasticTimeFreqTabularData'<00>PronyParameterTypeViscoelasticPronyTimeParms'<00>ElasticBulkModulus!<00><>ShortTermShearModulusG0!<00><>LongTermShearModulusGI!<00><>DecayConstant!<00><>ViscoelasticFrequencyDefnViscoelasticFrequencyDefn2FreqErrorTolerance<19>/<2F>z<EFBFBD>G<EFBFBD>{<7B>
FreqNMax.ViscoelasticFrequencyDefnCreepTestDataFormat.ViscoelasticFrequencyDefnRelaxTestDataFormat#FreqDomainLongTermShearCompliance<19><>G<EFBFBD>b<00>"FreqDomainLongTermBulkCompliance<19><>G<EFBFBD>b<00>#FreqDomainLongTermShearRelaxation<19><>G<EFBFBD>b<00>"FreqDomainLongTermBulkRelaxation<19><>G<EFBFBD>b<00>FreqNormalizedShearCompliance'<00>FreqNormalizedBulkCompliance'<00>FreqShearBulkComplianceData'<00>FreqNormalizedShearRelaxation'<00>FreqNormalizedBulkRelaxation'<00>FreqShearBulkRelaxationData'<00>ViscoelasticPronyFreqParms'<00>ViscoelasticPreloadViscoelasticPreload2ViscoelasticFreqTabularData'<00>ViscoelasticUniaxialData'<00>ViscoelasticBulkData'<00>*FrequencyNormalizedLossShearModuliiField'<00>1FrequencyUniaxialLossStorageModuliiClosureField'<00> ViscoelasticPronyShiftFunction'ViscoelasticPronyReferenceTemperature<19><>G<EFBFBD>b<00> 'ViscoelasticPronyCalibrationConstant1<19><>G<EFBFBD>b<00>'ViscoelasticPronyCalibrationConstant2<19><>G<EFBFBD>b<00>FreqFormulaG1&<00>FreqFormulaAlpha<19><>G<EFBFBD>b<00>FreqFormulaK1&<00>FreqFormulaBeta<19><>G<EFBFBD>b<00> Damping!<00><>SecondHookeCoefficient!<00><>ViscoplasticModelTypeCreepParameterEXPN!<00><>CreepParameterBIGK!<00><>CreepParameterLITK!<00><>IsotropicHardeningEXPM!<00><>KinematicHardeningCOCA!<00><>DamageParameterCOEN!<00><>DamageParameterEXEN!<00><>DamageParameterPDEN!<00><>DamageParameterDDEN!<00><>JohnsonCookConstantA<19><>G<EFBFBD>b<00>JohnsonCookConstantB<19><00>JohnsonCookConstantN<19><00>JohnsonCookConstantC<19><00>EffectiveFailurePlastStrain<19>3<EFBFBD>4W<34>ؠ<00>MaxStressWorkHardening<19><>G<EFBFBD>b<00>SaturationStress<19>5@<40>*,(<02><> QuasiStaticThresholdStrainRate<19><01>DamageModelTypeParameterDelay<19><01> TimeDelay<19><00><>EquivalentPlasticStrainLimit!<00><>MaxDamageValue<19><>G<EFBFBD>b<00>LinearBehaviorPlasticDamageOptionNonLinearDamageCurve!<00>NonLinearDamageStrainOption!EffectivePlasticStrainSoftening<19>2<EFBFBD><1A><><00>EffectivePlasticStrainRupture<19>2<EFBFBD><32><EFBFBD><1E><00>RcDcModelAlpha<19><00>RcDcModelBeta<19><00>RcDcModelGamma<19><00><> RcDcModelD0<19><00> RcDcModelB<19><00>RcDcModelLambda<19><00> RcDcModelDs<19><00>ShearStressParameterALPH<19><>G<EFBFBD>b<00>BulkModulusFailedMaterial<19><>G<EFBFBD>b<00>DynamicViscosityControlPressureCutoff<19><00><> DynamicVisc!<00><>DynamicViscTempPress!<00>ChildHIC1000deformation<19><>G<EFBFBD>b<00>ChildHIC1700deformation<19><>G<EFBFBD>b<00>AdultHIC1000deformation<19><>G<EFBFBD>b<00>AdultHIC1700deformation<19><>G<EFBFBD>b<00>LegImpactdeformation<19><>G<EFBFBD>b<00>NCAPChild650deformation<19><>G<EFBFBD>b<00>NCAPChild1000deformation<19><>G<EFBFBD>b<00>NCAPChild1350deformation<19><>G<EFBFBD>b<00>NCAPChild1700deformation<19><>G<EFBFBD>b<00>NCAPAdult650deformation<19><>G<EFBFBD>b<00>NCAPAdult1000deformation<19><>G<EFBFBD>b<00>NCAPAdult1350deformation<19><>G<EFBFBD>b<00>NCAPAdult1700deformation<19><>G<EFBFBD>b<00>CoatingsVisualizationColor&0<><30>0<><30>0<>@<00>CoatingsStudioMaterialNameSteelStudioMaterialSelectionListSelect Studio Material NameCrosshatchPatternSteelConfigurablePropertiesCoatingsThickness!<00><>CoatingsCoverageRatio!<00><> enableTab1 DefaultThickness<19><>G<EFBFBD>b<00>
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. 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2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. 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2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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<EFBFBD> BCDEFGHIJKLMN##RootTemperature, Strain<00><><EFBFBD>QPStrain Rate, Strain<00><><EFBFBD>LOTemperature, Fatigue Life<00><><EFBFBD>OWTemperature, Stress Amplitude<00><><EFBFBD>NU(Degree of Crystallization, Temperature<00><><EFBFBD>SM+Glass Transition Temperature, Temperature<00><><EFBFBD>QLDegree of Cure, Temperature<00><><EFBFBD>OK.Degree of Cure, Glass Transition Temperature<00><><EFBFBD>NOTemperature, Frequency<00><><EFBFBD>IL&Temperature, Peak Magnetic Induction<00><><EFBFBD>HJTemperature, Pressure<00><><EFBFBD>GH#Coefficient Per Unit Time, Strain<00><><EFBFBD>DEStrain Rate, Angle<00><><EFBFBD>AB Strain Rate<02>@<40><><EFBFBD>Angle<02>?<3F><><EFBFBD>Coefficient Per Unit Time<02>B<EFBFBD><42><EFBFBD>Strain<02>A<EFBFBD><41><EFBFBD> Temperature<02>D<EFBFBD><44><EFBFBD>
Pressure<02>C<EFBFBD><43><EFBFBD>0Peak Magnetic Induction<02>E<EFBFBD><45><EFBFBD>+ Frequency<02>F<EFBFBD><46><EFBFBD>Degree of Cure<02>H<EFBFBD><48><EFBFBD>Glass Transition Temperature<02>G<EFBFBD><47><EFBFBD>Degree of Crystallization<02>I<EFBFBD><49><EFBFBD>Stress Amplitude<02>J<EFBFBD><4A><EFBFBD>Fatigue Life<02>K<EFBFBD><4B><EFBFBD> Slope<02>ş<EFBFBD><C59F>Strain Amplitude<02>ğ<EFBFBD><C49F>Neutral Factor<02>ß<EFBFBD><C39F>Thickness-Bend Radius<03><><EFBFBD>Ÿ<EFBFBD><C29F>;Temperature, Degree of Cure, Glass Transition Temperature<04>D<EFBFBD>H<EFBFBD>G<EFBFBD><47><EFBFBD>%temperature,electric field strength<03>D<EFBFBD><44><EFBFBD><EFBFBD><EFBFBD>*Permanent Magnet - Relative Permeability<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>?Permanent Magnet - Relative Permeability with Demagnetization<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Steinmetz Coefficients<05><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Jiles-AthertonParams<06><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Normalized Shear Compliance<02><><EFBFBD><EFBFBD><EFBFBD>Normalized Bulk Compliance<02><><EFBFBD><EFBFBD><EFBFBD>"Shear Relaxation-Bulk Compliance<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Normalized Shear Relaxation<02><><EFBFBD><EFBFBD><EFBFBD>Normalized Bulk Relaxation<02><><EFBFBD><EFBFBD><EFBFBD>"Shear Relaxation-Bulk Relaxation<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>4Real and Imaginary Components of OmegaG and OmegaK<05><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>(Shear Relaxation-Bulk Relaxation Ratio<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Stress-Stress<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Frequency-Strain<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Bulk Stress-Stress<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Frequency-Volume Ratio<03><><EFBFBD>_<EFBFBD><5F><EFBFBD>#Normalized Loss and Shear Modulii<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>0Uniaxial Loss and Storage Modulii with Closure<04><><EFBFBD><EFBFBD><EFBFBD>[<5B><><EFBFBD>Orthotropic Stress Amplitude<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Orthotropic Strain Amplitude<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>*Linear Anisotropic Electric Conductivity<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>0Linear Anisotropic Electric Conductivity %IACS<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>)Linear Anisotropic Electric Resistivity<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>&Linear Anisotropic Permittivity (Er)<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>!Linear Anisotropic Permeability<07>z<EFBFBD>{<7B>|<7C>}<7D>~<7E><EFBFBD><7F><EFBFBD>"Complex Anisotropic Permeability  <0A>n<EFBFBD>o<EFBFBD>p<EFBFBD>q<EFBFBD>r<EFBFBD>s<EFBFBD>t<EFBFBD>u<EFBFBD>v<EFBFBD>w<EFBFBD>x<EFBFBD>y<EFBFBD><79><EFBFBD>$Anisotropic Steinmetz Coefficients  <0A>b<EFBFBD>c<EFBFBD>d<EFBFBD>e<EFBFBD>f<EFBFBD>g<EFBFBD>h<EFBFBD>i<EFBFBD>j<EFBFBD>k<EFBFBD>l<EFBFBD>m<EFBFBD><6D><EFBFBD>Stretch Ratio<02>a<EFBFBD><61><EFBFBD>Shear Tangent<02>`<60><><EFBFBD>Volume Ratio<02>_<EFBFBD><5F><EFBFBD>Strain-based Closure<02>^<5E><><EFBFBD>Length-based Closure<02>[<5B><><EFBFBD>$Temperature - Length-based Closure<03>[<5B>]<5D><><EFBFBD>Length Closure-Max Closure<03>[<5B>\<5C><><EFBFBD>(Temperature-Length Closure-Max Closure<04>[<5B>\<5C>]<5D><><EFBFBD>Leakage Volume Flux Rate<02>Z<EFBFBD><5A><EFBFBD>:Volumetric Strain<02>Y<EFBFBD><59><EFBFBD>Volumetric Strain Rate<02>X<EFBFBD><58><EFBFBD>Logarithmic Strain Rate<02>W<EFBFBD><57><EFBFBD>Gauge Length Change<02>V<EFBFBD><56><EFBFBD>
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Velocity<02><00><><EFBFBD>:Component Acceleration<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Component Force<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Component Pressure<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Component Moment<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Component Velocity<04><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Axisymmetric Plane<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Radial (axis)<02><><EFBFBD><EFBFBD><EFBFBD> N-D General<00><><EFBFBD>Axial<02><><EFBFBD><EFBFBD><EFBFBD>Gap Distance<02><><EFBFBD><EFBFBD><EFBFBD> Element ID<02><><EFBFBD><EFBFBD><EFBFBD>Element-Node ID<03><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Stress Tensor<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>Strain Tensor<07><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> Excitation<02>ߟ<EFBFBD><DF9F>Dimensionless<02>ޟ<EFBFBD><DE9F>Dimensionless Plane<03>ۉܟ<DB89><DC9F>Dimensionless Space<04>ۉ܉ݟ<DC89><DD9F>Depth<02>ڟ<EFBFBD><DA9F>Balanced Strain  <0A>ΉωЉщ҉ӉԉՉ։׉؉ٟ<D889><D99F>Y Axis<02>̟<EFBFBD><CC9F>Z Axis<02>ȟ<EFBFBD><C89F>
YZ Plane<03>̉ȟ<CC89><C89F>
ZX Plane<03>ȉɟ<C889><C99F>Length<02>ǟ<EFBFBD><C79F>Step<02>Ɵ<EFBFBD><C69F>##angle<00><00><00><><EFBFBD>## Strain Rate<00><00><00><><EFBFBD>##strain<00><00><00><><EFBFBD>##coefficient per unit time<00><00><00><><EFBFBD>##
pressure<00><00>press<00><><EFBFBD>0## temperature<00><00><00><><EFBFBD>##peak magnetic induction<00><00><00><><EFBFBD>+## frequency<00><00><00><><EFBFBD>##Glass Transition Temperature<00><00><00><><EFBFBD>##Degree of Cure<00><00><00><><EFBFBD>##Degree of Crystallization<00><00><00><><EFBFBD>##Stress Amplitude<00><00><00><><EFBFBD>##fatigue life<00><00><00><><EFBFBD> ## R-Ratio<00><00><00><><EFBFBD>##c1<00><00><00><><EFBFBD>##c2<00><00><00><><EFBFBD>##c3<00><00><00><><EFBFBD>##c4<00><00><00><><EFBFBD>##c5<00><00><00><><EFBFBD>##Normalized Gradient<00><00><00><><EFBFBD>##Reduction Factor<00><00><00><><EFBFBD>## Lower Bound<00><00><00><><EFBFBD>##
Diameter<00><00><00><><EFBFBD>##DeltaL<00><00><00><><EFBFBD>##Logarithmic Strain Rate<00><00><00><><EFBFBD>##Volumetric Strain Rate<00><00><00><><EFBFBD>##Volumetric Strain<00><00><00><><EFBFBD>##Leakage Volume Flux Rate<00><00><00><><EFBFBD>:##Closure Length<00><00><00><><EFBFBD>##Maximum Closure<00><00><00><><EFBFBD>## Temperature<00><00><00><><EFBFBD>##Closure Strain<00><00><00><><EFBFBD>##Volume Ratio<00><00><00><><EFBFBD>##Shear Tangent<00><00><00><><EFBFBD>##Stretch Ratio<00><00><00><><EFBFBD>## Kh (XX)<00><00><00><><EFBFBD>## Alpha (XX)<00><00><00><><EFBFBD>## Beta (XX)<00><00><00><><EFBFBD>## Ke (XX)<00><00><00><><EFBFBD>## Kh (YY)<00><00><00><><EFBFBD>## Alpha (YY)<00><00><00><><EFBFBD>## Beta (YY)<00><00><00><><EFBFBD>## Ke (YY)<00><00><00><><EFBFBD>## Kh (ZZ)<00><00><00><><EFBFBD>## Alpha (ZZ)<00><00><00><><EFBFBD>## Beta (ZZ)<00><00><00><><EFBFBD>## Ke (ZZ)<00><00><00><><EFBFBD>##Permeability XX (real)<00><00><00><><EFBFBD>##Permeability XX (imaginary)<00><00><00><><EFBFBD>##Permeability XY (real)<00><00><00><><EFBFBD>##Permeability XY (imaginary)<00><00><00><><EFBFBD>##Permeability XZ (real)<00><00><00><><EFBFBD>##Permeability XZ (imaginary)<00><00><00><><EFBFBD>##Permeability YY (real)<00><00><00><><EFBFBD>##Permeability YY (imaginary)<00><00><00><><EFBFBD>##Permeability YZ (real)<00><00><00><><EFBFBD>##Permeability YZ (imaginary)<00><00><00><><EFBFBD>##Permeability ZZ (real)<00><00><00><><EFBFBD>##Permeability ZZ (imaginary)<00><00><00><><EFBFBD>##Relative Permeability XX<00><00><00><><EFBFBD>##Relative Permeability XY<00><00><00><><EFBFBD>##Relative Permeability XZ<00><00><00><><EFBFBD>##Relative Permeability YY<00><00><00><><EFBFBD>##Relative Permeability YZ<00><00><00><><EFBFBD>##Relative Permeability ZZ<00><00><00><><EFBFBD>##Relative Permittivity XX<00><00><00><><EFBFBD>##Relative Permittivity XY<00><00><00><><EFBFBD>##Relative Permittivity XZ<00><00><00><><EFBFBD>##Relative Permittivity YY<00><00><00><><EFBFBD>##Relative Permittivity YZ<00><00><00><><EFBFBD>##Relative Permittivity ZZ<00><00><00><><EFBFBD>##Resistivity XX<00><00><00><><EFBFBD>'##Resistivity XY<00><00><00><><EFBFBD>'##Resistivity XZ<00><00><00><><EFBFBD>'##Resistivity YY<00><00><00><><EFBFBD>'##Resistivity YZ<00><00><00><><EFBFBD>'##Resistivity ZZ<00><00><00><><EFBFBD>'##
feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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per area<00><00><00><><EFBFBD>i##temperature change rate<00><00><00><><EFBFBD>j##jerk<00><00><00><><EFBFBD>k##angular jerk<00><00><00><><EFBFBD>l##magnetic field strength<00><00><00><><EFBFBD>-##magnetic flux density<00><00><00><><EFBFBD>+##angular momentum<00><00><00><><EFBFBD>m##velocity per pressure<00><00><00><><EFBFBD>n###coefficient per unit time squared<00><00><00><><EFBFBD>o##!coefficient per unit time cubed<00><00><00><><EFBFBD>p##static flow resistivity<00><00><00><><EFBFBD>q##current density<00><00><00><><EFBFBD>r##force per unit angle<00><00><00><><EFBFBD>s##length per angle<00><00><00><><EFBFBD>t##current density area<00><00><00><><EFBFBD>u##electricfieldstrength<00><00><00><><EFBFBD>v##electric flux density<00><00><00><><EFBFBD>w##electric charge<00><00><00><><EFBFBD>x##luminous intensity<00><00><00><><EFBFBD>y##luminous flux<00><00><00><><EFBFBD>z## luminance<00><00><00><><EFBFBD>{## illuminance<00><00><00><><EFBFBD>|##amount of substance<00><00><00><><EFBFBD>}##
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
UGS::BREF UGS::CM_STUB(UGS::Modl::NXParasolidVersioningServiceUGS::OM::Basic
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00

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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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+Version 9.4 JT DM 10.7.0.1
feat: Implement Study Organization System (Organization v2.0) Reorganized simple_beam_optimization study and created templates for future studies following best practices for clarity, chronology, and self-documentation. ## Study Reorganization (simple_beam_optimization) **New Directory Structure**: ``` studies/simple_beam_optimization/ ├── 1_setup/ # Pre-optimization setup │ ├── model/ # Reference CAD/FEM model │ └── benchmarking/ # Baseline validation results ├── 2_substudies/ # Optimization runs (numbered chronologically) │ ├── 01_initial_exploration/ │ ├── 02_validation_3d_3trials/ │ ├── 03_validation_4d_3trials/ │ └── 04_full_optimization_50trials/ └── 3_reports/ # Study-level analysis └── COMPREHENSIVE_BENCHMARK_RESULTS.md ``` **Key Changes**: 1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order 2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/ 3. **Centralized Reports**: Study-level docs moved to 3_reports/ 4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results ## Updated Metadata **study_metadata.json** (v2.0): - Tracks all 4 substudies with creation date, status, purpose - Includes result summaries (best objective, feasible count) - Documents new organization version **Substudies Documented**: - 01_initial_exploration - Initial design space exploration - 02_validation_3d_3trials - Validate 3D parameter updates - 03_validation_4d_3trials - Validate 4D updates including hole_count - 04_full_optimization_50trials - Full 50-trial optimization ## Templates for Future Studies **templates/study_template/** - Complete study structure: - README.md template with study overview format - study_metadata.json template with v2.0 schema - Pre-created 1_setup/, 2_substudies/, 3_reports/ directories **templates/substudy_README_template.md** - Standardized substudy documentation: - Purpose and hypothesis - Configuration changes from previous run - Expected vs actual results - Validation checklist - Lessons learned - Next steps **templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide: - Quick start (9 steps from template to first run) - Substudy workflow - Directory structure reference - Naming conventions - Best practices - Troubleshooting guide - Examples ## Benefits **Clarity**: - Numbered substudies show chronological progression (01 → 02 → 03 → 04) - Clear separation: setup vs. optimization runs vs. analysis - Self-documenting via substudy READMEs **Discoverability**: - study_metadata.json provides complete substudy registry - Each substudy README explains what was tested and why - Easy to find results for specific runs **Scalability**: - Works for small studies (3 substudies) or large studies (50+) - Chronological numbering scales to 99 substudies - Template system makes new studies quick to set up **Reproducibility**: - Each substudy documents configuration changes - Purpose and results clearly stated - Lessons learned captured for future reference ## Implementation Details **reorganize_study.py** - Migration script: - Handles locked files gracefully - Moves files to new structure - Provides clear progress reporting - Safe to run multiple times **Organization Version**: 2.0 - Tracked in study_metadata.json - Future studies will use this structure by default - Existing studies can migrate or keep current structure ## Files Added - templates/study_template/ - Complete study template - templates/substudy_README_template.md - Substudy documentation template - templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide - reorganize_study.py - Migration script for existing studies ## Files Reorganized (simple_beam_optimization) **Moved to 1_setup/**: - model/ → 1_setup/model/ (CAD/FEM reference files) - substudies/benchmarking/ → 1_setup/benchmarking/ - baseline_validation.json → 1_setup/ **Renamed and Moved to 2_substudies/**: - substudies/initial_exploration/ → 2_substudies/01_initial_exploration/ - substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/ - substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/ - substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/ **Moved to 3_reports/**: - COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/ **Substudy-Specific Docs** (moved to substudy directories): - OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md ## Documentation Created Each substudy now has README.md documenting: - **01_initial_exploration**: Initial exploration purpose - **02_validation_3d_3trials**: 3D parameter update validation - **03_validation_4d_3trials**: hole_count validation success - **04_full_optimization_50trials**: Full results, no feasible designs found ## Next Steps **For Future Studies**: 1. Copy templates/study_template/ 2. Follow templates/HOW_TO_CREATE_A_STUDY.md 3. Use numbered substudies (01_, 02_, ...) 4. Document each substudy with README.md **For Existing Studies**: - Can migrate using reorganize_study.py - Or apply organization v2.0 to new substudies only - See docs/STUDY_ORGANIZATION.md for migration guide 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-17 19:20:45 -05:00
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