feat: Dashboard improvements and configuration updates

Dashboard:
- Enhanced terminal components (ClaudeTerminal, GlobalClaudeTerminal)
- Improved MarkdownRenderer for better documentation display
- Updated convergence plots (ConvergencePlot, PlotlyConvergencePlot)
- Refined Home, Analysis, Dashboard, Setup, Results pages
- Added StudyContext improvements
- Updated vite.config for better dev experience

Configuration:
- Updated CLAUDE.md with latest instructions
- Enhanced launch_dashboard.py
- Updated config.py settings

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

atomizer-dashboard/frontend/src/components/GlobalClaudeTerminal.tsx

@@ -33,12 +33,14 @@ export const GlobalClaudeTerminal: React.FC = () => {
     );
   }
 
-  // Terminal panel
+  // Terminal panel - responsive sizing
+  // On mobile portrait: full width with small margins
+  // On tablet/desktop: fixed size panel
   return (
     <div className={`fixed z-50 transition-all duration-200 ${
       isExpanded
-        ? 'inset-4'
-        : 'bottom-6 right-6 w-[650px] h-[500px]'
+        ? 'inset-2 sm:inset-4'
+        : 'bottom-2 right-2 left-2 h-[400px] sm:bottom-6 sm:right-6 sm:left-auto sm:w-[650px] sm:h-[500px]'
     }`}>
       <ClaudeTerminal
         isExpanded={isExpanded}