feat: Dashboard improvements and configuration updates

Dashboard:
- Enhanced terminal components (ClaudeTerminal, GlobalClaudeTerminal)
- Improved MarkdownRenderer for better documentation display
- Updated convergence plots (ConvergencePlot, PlotlyConvergencePlot)
- Refined Home, Analysis, Dashboard, Setup, Results pages
- Added StudyContext improvements
- Updated vite.config for better dev experience

Configuration:
- Updated CLAUDE.md with latest instructions
- Enhanced launch_dashboard.py
- Updated config.py settings

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

launch_dashboard.py

@@ -27,9 +27,9 @@ class Colors:
 
 def print_banner():
     print(f"""
-{Colors.BLUE}{Colors.BOLD}╔═══════════════════════════════════════════╗
-║         ATOMIZER DASHBOARD LAUNCHER        ║
-╚═══════════════════════════════════════════╝{Colors.END}
+{Colors.BLUE}{Colors.BOLD}============================================
+         ATOMIZER DASHBOARD LAUNCHER
+============================================{Colors.END}
 """)
 
 def main():
@@ -50,11 +50,12 @@ def main():
     processes = []
 
     try:
-        # Start backend
+        # Start backend - use conda run to ensure atomizer environment
         print(f"{Colors.YELLOW}Starting backend server (FastAPI on port 8000)...{Colors.END}")
         backend_proc = subprocess.Popen(
-            ["python", "-m", "uvicorn", "api.main:app", "--reload", "--port", "8000"],
+            ["conda", "run", "-n", "atomizer", "python", "-m", "uvicorn", "api.main:app", "--port", "8000"],
             cwd=str(backend_dir),
+            shell=True,
             creationflags=subprocess.CREATE_NEW_PROCESS_GROUP if sys.platform == "win32" else 0
         )
         processes.append(("Backend", backend_proc))