feat: Pre-migration checkpoint - updated docs and utilities

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Updates before optimization_engine migration:
- Updated migration plan to v2.1 with complete file inventory
- Added OP_07 disk optimization protocol
- Added SYS_16 self-aware turbo protocol
- Added study archiver and cleanup utilities
- Added ensemble surrogate module
- Updated NX solver and session manager
- Updated zernike HTML generator
- Added context engineering plan
- LAC session insights updates

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

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Anto01

2025-12-29 10:22:45 -05:00

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21 changed files with 6304 additions and 890 deletions

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docs/plans/ATOMIZER_CONTEXT_ENGINEERING_PLAN.md Normal file

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