feat: Add Protocol 13 adaptive optimization, Plotly charts, and dashboard improvements

## Protocol 13: Adaptive Multi-Objective Optimization
- Iterative FEA + Neural Network surrogate workflow
- Initial FEA sampling, NN training, NN-accelerated search
- FEA validation of top NN predictions, retraining loop
- adaptive_state.json tracks iteration history and best values
- M1 mirror study (V11) with 103 FEA, 3000 NN trials

## Dashboard Visualization Enhancements
- Added Plotly.js interactive charts (parallel coords, Pareto, convergence)
- Lazy loading with React.lazy() for performance
- Code splitting: plotly.js-basic-dist (~1MB vs 3.5MB)
- Chart library toggle (Recharts default, Plotly on-demand)
- ExpandableChart component for full-screen modal views
- ConsoleOutput component for real-time log viewing

## Documentation
- Protocol 13 detailed documentation
- Dashboard visualization guide
- Plotly components README
- Updated run-optimization skill with Mode 5 (adaptive)

## Bug Fixes
- Fixed TypeScript errors in dashboard components
- Fixed Card component to accept ReactNode title
- Removed unused imports across components

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/settings.local.json

@@ -1,30 +1,21 @@
 {
   "permissions": {
     "allow": [
-      "Bash(powershell -Command \"Get-ChildItem -Filter ''*SESSION*.md'' | Move-Item -Destination ''08_ARCHIVE/session_summaries/''\")",
-      "Bash(powershell -Command \"Get-ChildItem -Filter ''PHASE*.md'' | Move-Item -Destination ''08_ARCHIVE/phase_documents/''\")",
-      "Bash(powershell -Command \"Get-ChildItem -Filter ''TODAY*.md'' | Move-Item -Destination ''08_ARCHIVE/historical/''; Get-ChildItem -Filter ''GOOD*.md'' | Move-Item -Destination ''08_ARCHIVE/historical/''; Get-ChildItem -Filter ''LESSONS*.md'' | Move-Item -Destination ''08_ARCHIVE/historical/''\")",
-      "Bash(if exist \"studies\\bracket_stiffness_optimization_V3\\2_results\\study.db\" del /Q \"studies\\bracket_stiffness_optimization_V3\\2_results\\study.db\")",
-      "Bash(if exist \"studies\\bracket_stiffness_optimization_V3\\2_results\\intelligent_optimizer\" rd /S /Q \"studies\\bracket_stiffness_optimization_V3\\2_results\\intelligent_optimizer\")",
-      "Bash(timeout /t 30 /nobreak)",
-      "Bash(del studiesdrone_gimbal_arm_optimizationrun_optimization.py)",
-      "Bash(if exist \"studies\\drone_gimbal_arm_optimization\\2_results\\study.db\" del /Q \"studies\\drone_gimbal_arm_optimization\\2_results\\study.db\")",
-      "Bash(del /S /Q \"optimization_engine\\extractors\\__pycache__\" 2)",
-      "Bash(del /S /Q \"optimization_engine\\__pycache__\" 2)",
-      "Bash(if exist \"2_results\\study.db\" del /Q \"2_results\\study.db\")",
+      "Bash(dir:*)",
       "Bash(sqlite3:*)",
-      "Bash(if exist \"studies\\drone_gimbal_arm_optimization\\2_results\\intelligent_optimizer\" rd /S /Q \"studies\\drone_gimbal_arm_optimization\\2_results\\intelligent_optimizer\")",
-      "Bash(if exist \"atomizer-dashboard\\frontend\\src\\components\\Card.tsx\" del /Q \"atomizer-dashboard\\frontend\\src\\components\\Card.tsx\")",
-      "Bash(del \"studies\\drone_gimbal_arm_optimization\\2_results\\study.db\" 2)",
-      "Bash(powershell -Command \"Get-ChildItem studies\\drone_gimbal_arm_optimization | Select-Object Name\")",
-      "Bash(powershell -Command:*)",
-      "Bash(git mv:*)",
-      "Bash(move optimization_enginellm_optimization_runner.py optimization_enginefuture )",
-      "Bash(move optimization_enginellm_workflow_analyzer.py optimization_enginefuture )",
-      "Bash(move optimization_engineinline_code_generator.py optimization_enginefuture )",
-      "Bash(move optimization_enginehook_generator.py optimization_enginefuture )",
-      "Bash(move optimization_enginereport_generator.py optimization_enginefuture )",
-      "Bash(move optimization_engineextractor_orchestrator.py optimization_enginefuture)"
+      "Bash(timeout /t 30 /nobreak)",
+      "Bash(npm install:*)",
+      "Bash(git add:*)",
+      "Bash(git commit:*)",
+      "Bash(git push:*)",
+      "Bash(python:*)",
+      "Bash(conda activate:*)",
+      "Bash(C:/Users/Antoine/miniconda3/envs/atomizer/python.exe:*)",
+      "Bash(cat:*)",
+      "Bash(C:UsersAntoineminiconda3envsatomizerpython.exe run_adaptive_mirror_optimization.py --fea-budget 100 --batch-size 5 --strategy hybrid)",
+      "Bash(/c/Users/Antoine/miniconda3/envs/atomizer/python.exe:*)",
+      "Bash(npm run build:*)",
+      "Bash(npm uninstall:*)"
     ],
     "deny": [],
     "ask": []