feat: Add Protocol 13 adaptive optimization, Plotly charts, and dashboard improvements

## Protocol 13: Adaptive Multi-Objective Optimization
- Iterative FEA + Neural Network surrogate workflow
- Initial FEA sampling, NN training, NN-accelerated search
- FEA validation of top NN predictions, retraining loop
- adaptive_state.json tracks iteration history and best values
- M1 mirror study (V11) with 103 FEA, 3000 NN trials

## Dashboard Visualization Enhancements
- Added Plotly.js interactive charts (parallel coords, Pareto, convergence)
- Lazy loading with React.lazy() for performance
- Code splitting: plotly.js-basic-dist (~1MB vs 3.5MB)
- Chart library toggle (Recharts default, Plotly on-demand)
- ExpandableChart component for full-screen modal views
- ConsoleOutput component for real-time log viewing

## Documentation
- Protocol 13 detailed documentation
- Dashboard visualization guide
- Plotly components README
- Updated run-optimization skill with Mode 5 (adaptive)

## Bug Fixes
- Fixed TypeScript errors in dashboard components
- Fixed Card component to accept ReactNode title
- Removed unused imports across components

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

studies/m1_mirror_adaptive_V11/1_setup/optimization_config.json

@@ -0,0 +1,207 @@
+{
+  "$schema": "Atomizer M1 Mirror Adaptive Surrogate Optimization V11",
+  "study_name": "m1_mirror_adaptive_V11",
+  "description": "V11 - Adaptive surrogate optimization with real FEA validation. Cross-links V10 training data. NN/FEA trial differentiation for dashboard.",
+
+  "source_study": {
+    "path": "../m1_mirror_zernike_optimization_V10",
+    "database": "../m1_mirror_zernike_optimization_V10/3_results/study.db",
+    "iterations_dir": "../m1_mirror_zernike_optimization_V10/2_iterations",
+    "description": "V10 FEA data used for initial surrogate training"
+  },
+
+  "source_model_dir": "C:\\Users\\Antoine\\CADTOMASTE\\Atomizer\\M1-Gigabit\\Latest",
+
+  "design_variables": [
+    {
+      "name": "lateral_inner_angle",
+      "expression_name": "lateral_inner_angle",
+      "min": 25.0,
+      "max": 28.5,
+      "baseline": 26.79,
+      "units": "degrees",
+      "enabled": true
+    },
+    {
+      "name": "lateral_outer_angle",
+      "expression_name": "lateral_outer_angle",
+      "min": 13.0,
+      "max": 17.0,
+      "baseline": 14.64,
+      "units": "degrees",
+      "enabled": true
+    },
+    {
+      "name": "lateral_outer_pivot",
+      "expression_name": "lateral_outer_pivot",
+      "min": 9.0,
+      "max": 12.0,
+      "baseline": 10.40,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "lateral_inner_pivot",
+      "expression_name": "lateral_inner_pivot",
+      "min": 9.0,
+      "max": 12.0,
+      "baseline": 10.07,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "lateral_middle_pivot",
+      "expression_name": "lateral_middle_pivot",
+      "min": 18.0,
+      "max": 23.0,
+      "baseline": 20.73,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "lateral_closeness",
+      "expression_name": "lateral_closeness",
+      "min": 9.5,
+      "max": 12.5,
+      "baseline": 11.02,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "whiffle_min",
+      "expression_name": "whiffle_min",
+      "min": 35.0,
+      "max": 55.0,
+      "baseline": 40.55,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "whiffle_outer_to_vertical",
+      "expression_name": "whiffle_outer_to_vertical",
+      "min": 68.0,
+      "max": 80.0,
+      "baseline": 75.67,
+      "units": "degrees",
+      "enabled": true
+    },
+    {
+      "name": "whiffle_triangle_closeness",
+      "expression_name": "whiffle_triangle_closeness",
+      "min": 50.0,
+      "max": 65.0,
+      "baseline": 60.00,
+      "units": "mm",
+      "enabled": true
+    },
+    {
+      "name": "blank_backface_angle",
+      "expression_name": "blank_backface_angle",
+      "min": 4,
+      "max": 5.0,
+      "baseline": 4.23,
+      "units": "degrees",
+      "enabled": true
+    },
+    {
+      "name": "inner_circular_rib_dia",
+      "expression_name": "inner_circular_rib_dia",
+      "min": 480.0,
+      "max": 620.0,
+      "baseline": 534.00,
+      "units": "mm",
+      "enabled": true
+    }
+  ],
+
+  "objectives": [
+    {
+      "name": "rel_filtered_rms_40_vs_20",
+      "description": "Filtered RMS WFE at 40 deg relative to 20 deg reference (operational tracking)",
+      "direction": "minimize",
+      "weight": 5.0,
+      "target": 4.0,
+      "units": "nm",
+      "extractor_config": {
+        "target_subcase": "3",
+        "reference_subcase": "2",
+        "metric": "relative_filtered_rms_nm"
+      }
+    },
+    {
+      "name": "rel_filtered_rms_60_vs_20",
+      "description": "Filtered RMS WFE at 60 deg relative to 20 deg reference (operational tracking)",
+      "direction": "minimize",
+      "weight": 5.0,
+      "target": 10.0,
+      "units": "nm",
+      "extractor_config": {
+        "target_subcase": "4",
+        "reference_subcase": "2",
+        "metric": "relative_filtered_rms_nm"
+      }
+    },
+    {
+      "name": "mfg_90_optician_workload",
+      "description": "Manufacturing deformation at 90 deg polishing (J1-J3 filtered RMS)",
+      "direction": "minimize",
+      "weight": 1.0,
+      "target": 20.0,
+      "units": "nm",
+      "extractor_config": {
+        "target_subcase": "1",
+        "reference_subcase": "2",
+        "metric": "relative_rms_filter_j1to3"
+      }
+    }
+  ],
+
+  "zernike_settings": {
+    "n_modes": 50,
+    "filter_low_orders": 4,
+    "displacement_unit": "mm",
+    "subcases": ["1", "2", "3", "4"],
+    "subcase_labels": {"1": "90deg", "2": "20deg", "3": "40deg", "4": "60deg"},
+    "reference_subcase": "2"
+  },
+
+  "adaptive_settings": {
+    "max_iterations": 100,
+    "surrogate_trials_per_iter": 1000,
+    "fea_batch_size": 5,
+    "strategy": "hybrid",
+    "exploration_ratio": 0.3,
+    "convergence_threshold_nm": 0.3,
+    "patience": 5,
+    "min_training_samples": 30,
+    "retrain_epochs": 300
+  },
+
+  "surrogate_settings": {
+    "model_type": "ZernikeSurrogate",
+    "hidden_dims": [128, 256, 256, 128, 64],
+    "dropout": 0.1,
+    "learning_rate": 0.001,
+    "batch_size": 16,
+    "mc_dropout_samples": 30
+  },
+
+  "nx_settings": {
+    "nx_install_path": "C:\\Program Files\\Siemens\\NX2506",
+    "sim_file": "ASSY_M1_assyfem1_sim1.sim",
+    "solution_name": "Solution 1",
+    "op2_pattern": "*-solution_1.op2",
+    "simulation_timeout_s": 600,
+    "journal_timeout_s": 120,
+    "op2_timeout_s": 1800,
+    "auto_start_nx": true
+  },
+
+  "dashboard_settings": {
+    "trial_source_tag": true,
+    "fea_marker": "circle",
+    "nn_marker": "cross",
+    "fea_color": "#2196F3",
+    "nn_color": "#FF9800"
+  }
+}