Rebrand project from nx-optimaster to Atomizer

- Update project name in all documentation files
- Update GitHub repository references to Anto01/Atomizer
- Update Python package name to 'atomizer'
- Update conda environment name references
- Update all module docstrings with new branding

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

GITHUB_SETUP.md

@@ -5,8 +5,8 @@
 1. **Go to GitHub**: https://github.com/new
 
 2. **Repository Settings**:
-   - **Owner**: Your GitHub username or organization (e.g., `atomaste`)
-   - **Repository name**: `nx-optimaster` (or your preferred name)
+   - **Owner**: `Anto01`
+   - **Repository name**: `Atomizer`
    - **Description**: "Advanced optimization platform for Siemens NX Simcenter with LLM integration"
    - **Visibility**: ✅ **Private**
    - **DO NOT** initialize with README, .gitignore, or license (we already have these)
@@ -21,10 +21,10 @@ After creating the repository on GitHub, run these commands:
 cd /c/Users/antoi/Documents/Atomaste/Atomizer
 
 # Add the remote repository
-git remote add origin https://github.com/YOUR-USERNAME/nx-optimaster.git
+git remote add origin https://github.com/Anto01/Atomizer.git
 
 # OR if using SSH:
-# git remote add origin git@github.com:YOUR-USERNAME/nx-optimaster.git
+# git remote add origin git@github.com:Anto01/Atomizer.git
 
 # Push the initial commit
 git branch -M main
@@ -33,11 +33,11 @@ git push -u origin main
 
 ## Verify Push
 
-Visit your repository at: `https://github.com/YOUR-USERNAME/nx-optimaster`
+Visit your repository at: `https://github.com/Anto01/Atomizer`
 
 You should see:
 - README.md displayed on the main page
-- All 12 files committed
+- All files committed
 - Private repository badge
 
 ## Next Steps
@@ -77,8 +77,8 @@ Settings → Collaborators → Add people
 ## Clone on Another Machine
 
 ```bash
-git clone https://github.com/YOUR-USERNAME/nx-optimaster.git
-cd nx-optimaster
+git clone https://github.com/Anto01/Atomizer.git
+cd Atomizer
 pip install -r requirements.txt
 ```
 
@@ -100,7 +100,3 @@ git push -u origin feature/new-feature
 # Pull latest changes
 git pull origin main
 ```
-
----
-
-**Note**: Replace `YOUR-USERNAME` with your actual GitHub username throughout this guide.