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docs: Major documentation overhaul - restructure folders, update tagline, add Getting Started guide

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- Restructure docs/ folder (remove numeric prefixes):
  - 04_USER_GUIDES -> guides/
  - 05_API_REFERENCE -> api/
  - 06_PHYSICS -> physics/
  - 07_DEVELOPMENT -> development/
  - 08_ARCHIVE -> archive/
  - 09_DIAGRAMS -> diagrams/

- Replace tagline 'Talk, don't click' with 'LLM-driven optimization framework' in 9 files

- Create comprehensive docs/GETTING_STARTED.md:
  - Prerequisites and quick setup
  - Project structure overview
  - First study tutorial (Claude or manual)
  - Dashboard usage guide
  - Neural acceleration introduction

- Rewrite docs/00_INDEX.md with correct paths and modern structure

- Archive obsolete files:
  - 01_PROTOCOLS.md -> archive/historical/01_PROTOCOLS_legacy.md
  - 03_GETTING_STARTED.md -> archive/historical/
  - ATOMIZER_PODCAST_BRIEFING.md -> archive/marketing/

- Update timestamps to 2026-01-20 across all key files

- Update .gitignore to exclude docs/generated/

- Version bump: ATOMIZER_CONTEXT v1.8 -> v2.0
This commit is contained in:
Anto01
2026-01-20 10:03:45 -05:00
parent 37f73cc2be
commit ea437d360e
103 changed files with 8980 additions and 327 deletions
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8
CLAUDE.md
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@@ -68,7 +68,7 @@ This file provides:
## Core Philosophy
**Talk, don't click.** Users describe what they want in plain language. You interpret, configure, execute, and explain.
**LLM-driven optimization framework.** Users describe what they want in plain language. You interpret, configure, execute, and explain.
## Context Loading Layers
@@ -207,9 +207,9 @@ Atomizer/
| Feature | Documentation |
|---------|--------------|
| **Canvas Builder** | `docs/04_USER_GUIDES/CANVAS.md` |
| **Dashboard Overview** | `docs/04_USER_GUIDES/DASHBOARD.md` |
| **Implementation Status** | `docs/04_USER_GUIDES/DASHBOARD_IMPLEMENTATION_STATUS.md` |
| **Canvas Builder** | `docs/guides/CANVAS.md` |
| **Dashboard Overview** | `docs/guides/DASHBOARD.md` |
| **Implementation Status** | `docs/guides/DASHBOARD_IMPLEMENTATION_STATUS.md` |
**Canvas V3.1 Features (AtomizerSpec v2.0):**
- **AtomizerSpec v2.0**: Unified JSON configuration format