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857c01e7ca
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chore: major repo cleanup - remove dead code and cruft
Remove ~24K lines of dead code for a lean rebuild foundation:
- Remove atomizer-field/ (neural field predictor experiment, concept archived in docs)
- Remove generated_extractors/, generated_hooks/ (legacy generator outputs)
- Remove optimization_validation/ (empty skeleton)
- Remove reports/ (superseded by optimization_engine/reporting/)
- Remove root-level stale files: DEVELOPMENT.md, INSTALL_INSTRUCTIONS.md,
config.py, atomizer_paths.py, optimization_config.json, train_neural.bat,
generate_training_data.py, run_training_fea.py, migrate_imports.py
- Update .gitignore for introspection caches and insight outputs
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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2026-02-09 14:26:37 -05:00 |
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ea437d360e
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docs: Major documentation overhaul - restructure folders, update tagline, add Getting Started guide
- Restructure docs/ folder (remove numeric prefixes):
- 04_USER_GUIDES -> guides/
- 05_API_REFERENCE -> api/
- 06_PHYSICS -> physics/
- 07_DEVELOPMENT -> development/
- 08_ARCHIVE -> archive/
- 09_DIAGRAMS -> diagrams/
- Replace tagline 'Talk, don't click' with 'LLM-driven optimization framework' in 9 files
- Create comprehensive docs/GETTING_STARTED.md:
- Prerequisites and quick setup
- Project structure overview
- First study tutorial (Claude or manual)
- Dashboard usage guide
- Neural acceleration introduction
- Rewrite docs/00_INDEX.md with correct paths and modern structure
- Archive obsolete files:
- 01_PROTOCOLS.md -> archive/historical/01_PROTOCOLS_legacy.md
- 03_GETTING_STARTED.md -> archive/historical/
- ATOMIZER_PODCAST_BRIEFING.md -> archive/marketing/
- Update timestamps to 2026-01-20 across all key files
- Update .gitignore to exclude docs/generated/
- Version bump: ATOMIZER_CONTEXT v1.8 -> v2.0
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2026-01-20 10:03:45 -05:00 |
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