Antoine/Atomizer
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7 Commits

Author SHA1 Message Date
Anto01
5bd142780f feat(canvas): Add Phase 3+4 - Bidirectional sync, templates, and visual polish 
Phase 3 - Bidirectional Sync:
- Add loadFromIntent and loadFromConfig to canvas store
- Create useIntentParser hook for parsing Claude messages
- Create ConfigImporter component (file upload, paste JSON, load study)
- Add import/clear buttons to CanvasView header

Phase 4 - Templates & Polish:
- Create template library with 5 presets:
  - Mass Minimization (single-objective)
  - Multi-Objective Pareto (NSGA-II)
  - Turbo Mode (with MLP surrogate)
  - Mirror Zernike (optical optimization)
  - Frequency Optimization (modal)
- Create TemplateSelector component with category filters
- Enhanced BaseNode with animations, glow effects, status indicators
- Add colorBg to all node types for visual distinction
- Add notification toast system
- Update all exports

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-14 20:30:28 -05:00
Anto01
1ae35382da feat: Phase 2 - LLM Integration for Canvas 
- Add canvas.ts MCP tool with validate_canvas_intent, execute_canvas_intent, interpret_canvas_intent
- Add useCanvasChat.ts bridge hook connecting canvas to chat system
- Update context_builder.py with canvas tool instructions
- Add ExecuteDialog for study name input
- Add ChatPanel for canvas-integrated Claude responses
- Connect AtomizerCanvas to Claude via useCanvasChat

Canvas workflow now:
1. Build graph visually
2. Click Validate/Analyze/Execute
3. Claude processes intent via MCP tools
4. Response shown in integrated chat panel

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-14 20:18:46 -05:00
Anto01
7919511bb2 feat: Phase 1 - Canvas with React Flow 
- 8 node types (Model, Solver, DesignVar, Extractor, Objective, Constraint, Algorithm, Surrogate)
- Drag-drop from palette to canvas
- Node configuration panels
- Graph validation with error/warning display
- Intent JSON serialization
- Zustand state management

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-14 20:00:35 -05:00
Anto01
73a7b9d9f1 feat: Add dashboard chat integration and MCP server 
Major changes:
- Dashboard: WebSocket-based chat with session management
- Dashboard: New chat components (ChatPane, ChatInput, ModeToggle)
- Dashboard: Enhanced UI with parallel coordinates chart
- MCP Server: New atomizer-tools server for Claude integration
- Extractors: Enhanced Zernike OPD extractor
- Reports: Improved report generator

New studies (configs and scripts only):
- M1 Mirror: Cost reduction campaign studies
- Simple Beam, Simple Bracket, UAV Arm studies

Note: Large iteration data (2_iterations/, best_design_archive/)
excluded via .gitignore - kept on local Gitea only.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-13 15:53:55 -05:00
Antoine
5fb94fdf01 feat: Add Analysis page, run comparison, notifications, and config editor 
Dashboard enhancements:
- Add Analysis page with tabs: Overview, Parameters, Pareto, Correlations, Constraints, Surrogate, Runs
- Add PlotlyCorrelationHeatmap for parameter-objective correlation analysis
- Add PlotlyFeasibilityChart for constraint satisfaction visualization
- Add PlotlySurrogateQuality for FEA vs NN prediction comparison
- Add PlotlyRunComparison for comparing optimization runs within a study

Real-time improvements:
- Replace watchdog file-watching with SQLite database polling for better Windows reliability
- Add DatabasePoller class with 2-second polling interval
- Enhanced WebSocket messages: trial_completed, new_best, pareto_update, progress

Desktop notifications:
- Add useNotifications hook using Web Notifications API
- Add NotificationSettings toggle component
- Notify users when new best solutions are found

Config editor:
- Add PUT /studies/{study_id}/config endpoint with auto-backup
- Add ConfigEditor modal with tabs: General, Variables, Objectives, Settings, JSON
- Prevents editing while optimization is running

Enhanced Pareto visualization:
- Add dark mode styling with transparent backgrounds
- Add stats bar showing Pareto, FEA, NN, and infeasible counts
- Add Pareto front connecting line for 2D view
- Add table showing top 10 Pareto-optimal solutions

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-12-05 19:57:20 -05:00
Antoine
8cbdbcad78 feat: Add Protocol 13 adaptive optimization, Plotly charts, and dashboard improvements 
## Protocol 13: Adaptive Multi-Objective Optimization
- Iterative FEA + Neural Network surrogate workflow
- Initial FEA sampling, NN training, NN-accelerated search
- FEA validation of top NN predictions, retraining loop
- adaptive_state.json tracks iteration history and best values
- M1 mirror study (V11) with 103 FEA, 3000 NN trials

## Dashboard Visualization Enhancements
- Added Plotly.js interactive charts (parallel coords, Pareto, convergence)
- Lazy loading with React.lazy() for performance
- Code splitting: plotly.js-basic-dist (~1MB vs 3.5MB)
- Chart library toggle (Recharts default, Plotly on-demand)
- ExpandableChart component for full-screen modal views
- ConsoleOutput component for real-time log viewing

## Documentation
- Protocol 13 detailed documentation
- Dashboard visualization guide
- Plotly components README
- Updated run-optimization skill with Mode 5 (adaptive)

## Bug Fixes
- Fixed TypeScript errors in dashboard components
- Fixed Card component to accept ReactNode title
- Removed unused imports across components

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-12-04 07:41:54 -05:00
Anto01
e3bdb08a22 feat: Major update with validators, skills, dashboard, and docs reorganization 
- Add validation framework (config, model, results, study validators)
- Add Claude Code skills (create-study, run-optimization, generate-report,
  troubleshoot, analyze-model)
- Add Atomizer Dashboard (React frontend + FastAPI backend)
- Reorganize docs into structured directories (00-09)
- Add neural surrogate modules and training infrastructure
- Add multi-objective optimization support

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-11-25 19:23:58 -05:00