Antoine/Atomizer
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27d9dbee5bd618a0e1c6eeb2d4391cc7bc112c0f
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6 Commits

Author SHA1 Message Date
Anto01
73a7b9d9f1 feat: Add dashboard chat integration and MCP server 
Major changes:
- Dashboard: WebSocket-based chat with session management
- Dashboard: New chat components (ChatPane, ChatInput, ModeToggle)
- Dashboard: Enhanced UI with parallel coordinates chart
- MCP Server: New atomizer-tools server for Claude integration
- Extractors: Enhanced Zernike OPD extractor
- Reports: Improved report generator

New studies (configs and scripts only):
- M1 Mirror: Cost reduction campaign studies
- Simple Beam, Simple Bracket, UAV Arm studies

Note: Large iteration data (2_iterations/, best_design_archive/)
excluded via .gitignore - kept on local Gitea only.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-13 15:53:55 -05:00
Anto01
155e2a1b8e docs: Add OP_08 report generation and update protocol numbering 
- Add OP_08 to cheatsheet task lookup table
- Create Report Generation section in cheatsheet
- Update SYS_16/17/18 numbering (SAT, Insights, Context)
- Create StatusBadge component for dashboard
- Create OP_08_GENERATE_REPORT.md protocol document

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
 2026-01-07 08:55:56 -05:00
Antoine
fb2d06236a feat: Improve dashboard layout and Claude terminal context 
- Reorganize dashboard: control panel on top, charts stacked vertically
- Add Set Context button to Claude terminal for study awareness
- Add conda environment instructions to CLAUDE.md
- Fix STUDY_REPORT.md location in generate-report.md skill
- Claude terminal now sends study context with skills reminder

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-12-04 20:59:31 -05:00
Antoine
9eed4d81eb feat: Add Claude Code terminal integration to dashboard 
- Add embedded Claude Code terminal with xterm.js for full CLI experience
- Create WebSocket PTY backend for real-time terminal communication
- Add terminal status endpoint to check CLI availability
- Update dashboard to use Claude Code terminal instead of API chat
- Add optimization control panel with start/stop/validate actions
- Add study context provider for global state management
- Update frontend with new dependencies (xterm.js addons)
- Comprehensive README documentation for all new features

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-12-04 15:02:13 -05:00
Antoine
8cbdbcad78 feat: Add Protocol 13 adaptive optimization, Plotly charts, and dashboard improvements 
## Protocol 13: Adaptive Multi-Objective Optimization
- Iterative FEA + Neural Network surrogate workflow
- Initial FEA sampling, NN training, NN-accelerated search
- FEA validation of top NN predictions, retraining loop
- adaptive_state.json tracks iteration history and best values
- M1 mirror study (V11) with 103 FEA, 3000 NN trials

## Dashboard Visualization Enhancements
- Added Plotly.js interactive charts (parallel coords, Pareto, convergence)
- Lazy loading with React.lazy() for performance
- Code splitting: plotly.js-basic-dist (~1MB vs 3.5MB)
- Chart library toggle (Recharts default, Plotly on-demand)
- ExpandableChart component for full-screen modal views
- ConsoleOutput component for real-time log viewing

## Documentation
- Protocol 13 detailed documentation
- Dashboard visualization guide
- Plotly components README
- Updated run-optimization skill with Mode 5 (adaptive)

## Bug Fixes
- Fixed TypeScript errors in dashboard components
- Fixed Card component to accept ReactNode title
- Removed unused imports across components

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-12-04 07:41:54 -05:00
Anto01
e3bdb08a22 feat: Major update with validators, skills, dashboard, and docs reorganization 
- Add validation framework (config, model, results, study validators)
- Add Claude Code skills (create-study, run-optimization, generate-report,
  troubleshoot, analyze-model)
- Add Atomizer Dashboard (React frontend + FastAPI backend)
- Reorganize docs into structured directories (00-09)
- Add neural surrogate modules and training infrastructure
- Add multi-objective optimization support

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
 2025-11-25 19:23:58 -05:00