Phase 1 - Accurate study status detection:
- Add is_optimization_running() to check for active processes
- Add get_accurate_study_status() with proper status logic
- Status now: not_started, running, paused, completed
- Add "paused" status styling (orange) to Home page
Phase 2 - Global Claude terminal:
- Create ClaudeTerminalContext for app-level state
- Create GlobalClaudeTerminal floating component
- Terminal persists across page navigation
- Shows green indicator when connected
- Remove inline terminal from Dashboard
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Reorganize dashboard: control panel on top, charts stacked vertically
- Add Set Context button to Claude terminal for study awareness
- Add conda environment instructions to CLAUDE.md
- Fix STUDY_REPORT.md location in generate-report.md skill
- Claude terminal now sends study context with skills reminder
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Add trial limiting (300 max) and reduce polling to 15s for large studies
- Make dashboard layout wider with col-span adjustments
- Claude terminal now runs from Atomizer root for CLAUDE.md/skills access
- Add study context display in terminal on connect
- Add KaTeX math rendering styles for study reports
- Add surrogate tuner module for hyperparameter optimization
- Fix backend proxy to port 8001
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Add embedded Claude Code terminal with xterm.js for full CLI experience
- Create WebSocket PTY backend for real-time terminal communication
- Add terminal status endpoint to check CLI availability
- Update dashboard to use Claude Code terminal instead of API chat
- Add optimization control panel with start/stop/validate actions
- Add study context provider for global state management
- Update frontend with new dependencies (xterm.js addons)
- Comprehensive README documentation for all new features
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
