2 Commits

Author	SHA1	Message	Date
Antoine	d1261d62fd	refactor: Major project cleanup and reorganization ... ## Removed Duplicate Directories - Deleted old `dashboard/` (replaced by atomizer-dashboard) - Deleted old `mcp_server/` Python tools (moved model_discovery to optimization_engine) - Deleted `tests/mcp_server/` (obsolete tests) - Deleted `launch_dashboard.bat` (old launcher) ## Consolidated Code - Moved `mcp_server/tools/model_discovery.py` to `optimization_engine/model_discovery/` - Updated import in `optimization_config_builder.py` - Deleted stub `extract_mass.py` (use extract_mass_from_bdf instead) - Deleted unused `intelligent_setup.py` and `hybrid_study_creator.py` - Archived `result_extractors/` to `archive/deprecated/` ## Documentation Cleanup - Deleted deprecated `docs/06_PROTOCOLS_DETAILED/` (14 files) - Archived dated dev docs to `docs/08_ARCHIVE/sessions/` - Archived old plans to `docs/08_ARCHIVE/plans/` - Updated `docs/protocols/README.md` with SYS_15 ## Skills Consolidation - Archived redundant study creation skills to `.claude/skills/archive/` - Kept `core/study-creation-core.md` as canonical ## Housekeeping - Updated `.gitignore` to prevent `nul` and `_dat_run*.dat` 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>	2025-12-12 11:24:02 -05:00
Anto01	e3bdb08a22	feat: Major update with validators, skills, dashboard, and docs reorganization ... - Add validation framework (config, model, results, study validators) - Add Claude Code skills (create-study, run-optimization, generate-report, troubleshoot, analyze-model) - Add Atomizer Dashboard (React frontend + FastAPI backend) - Reorganize docs into structured directories (00-09) - Add neural surrogate modules and training infrastructure - Add multi-objective optimization support 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>	2025-11-25 19:23:58 -05:00