- Add neural optional group (torch, torch-geometric, tensorboard)
- Add gnn optional group (torch, torch-geometric)
- Add all optional group for convenience
- Remove mcp optional group (not implemented)
- Remove mcp_server from packages.find
- Update pytest coverage config
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Update project name in all documentation files
- Update GitHub repository references to Anto01/Atomizer
- Update Python package name to 'atomizer'
- Update conda environment name references
- Update all module docstrings with new branding
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Set up Python package structure with pyproject.toml
- Created MCP server, optimization engine, and NX journals modules
- Added configuration templates
- Implemented pluggable result extractor architecture
- Comprehensive README with architecture overview
- Project ready for GitHub push
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
