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feature/studio-enhancement
Atomizer/atomizer-dashboard/backend/api/routes/optimization.py
Anto01 c224b16ac3 feat: Add panel management, validation, and error handling to canvas 
Phase 1 - Panel Management System:
- Create usePanelStore.ts for centralized panel state management
- Add PanelContainer.tsx for draggable floating panels
- Create FloatingIntrospectionPanel.tsx (persistent, doesn't disappear on node click)
- Create ResultsPanel.tsx for trial result details
- Refactor NodeConfigPanelV2 to use panel store for introspection
- Integrate PanelContainer into CanvasView

Phase 2 - Pre-run Validation:
- Create specValidator.ts with comprehensive validation rules
- Add ValidationPanel (enhanced version with error navigation)
- Add Validate button to SpecRenderer with status indicator
- Block run if validation fails
- Check for: design vars, objectives, extractors, bounds, connections

Phase 3 - Error Handling & Recovery:
- Create ErrorPanel.tsx for displaying optimization errors
- Add error classification (nx_crash, solver_fail, extractor_error, etc.)
- Add recovery suggestions based on error type
- Update status endpoint to return error info
- Add _get_study_error_info helper to check error_status.json and DB
- Integrate error detection into status polling

Documentation:
- Add CANVAS_ROBUSTNESS_PLAN.md with full implementation plan
2026-01-21 21:35:31 -05:00

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"""
Optimization API endpoints
Handles study status, history retrieval, and control operations
"""
from fastapi import APIRouter, HTTPException, UploadFile, File, Form
from fastapi.responses import JSONResponse, FileResponse
from pydantic import BaseModel
from pathlib import Path
from typing import List, Dict, Optional
import json
import sys
import sqlite3
import shutil
import subprocess
import psutil
import signal
import time
from datetime import datetime
# Add project root to path
sys.path.append(str(Path(__file__).parent.parent.parent.parent.parent))
router = APIRouter()
# Base studies directory
STUDIES_DIR = Path(__file__).parent.parent.parent.parent.parent / "studies"
def get_results_dir(study_dir: Path) -> Path:
"""Get the results directory for a study, supporting both 2_results and 3_results."""
results_dir = study_dir / "2_results"
if not results_dir.exists():
results_dir = study_dir / "3_results"
return results_dir
def resolve_study_path(study_id: str) -> Path:
"""Find study folder by scanning all topic directories.
Supports nested folder structure: studies/Topic/study_name/
Study ID can be:
- Short name (e.g., 'm1_mirror_adaptive_V14') - scans all topic folders
- Full nested path (e.g., 'M1_Mirror/m1_mirror_cost_reduction_lateral')
Returns the full path to the study directory.
Raises HTTPException 404 if not found.
"""
# Handle nested path format (e.g., "M1_Mirror/m1_mirror_cost_reduction_lateral")
if "/" in study_id:
# Try with forward slashes
nested_path = STUDIES_DIR / study_id
if nested_path.exists() and nested_path.is_dir():
if _is_valid_study_dir(nested_path):
return nested_path
# Try with backslashes (Windows path)
nested_path = STUDIES_DIR / study_id.replace("/", "\\")
if nested_path.exists() and nested_path.is_dir():
if _is_valid_study_dir(nested_path):
return nested_path
# First check direct path (backwards compatibility for flat structure)
direct_path = STUDIES_DIR / study_id
if direct_path.exists() and direct_path.is_dir():
if _is_valid_study_dir(direct_path):
return direct_path
# Scan topic folders for nested structure
for topic_dir in STUDIES_DIR.iterdir():
if topic_dir.is_dir() and not topic_dir.name.startswith("."):
study_dir = topic_dir / study_id
if study_dir.exists() and study_dir.is_dir():
if _is_valid_study_dir(study_dir):
return study_dir
raise HTTPException(status_code=404, detail=f"Study not found: {study_id}")
def _is_valid_study_dir(study_dir: Path) -> bool:
"""Check if a directory is a valid study directory."""
return (
(study_dir / "1_setup").exists()
or (study_dir / "optimization_config.json").exists()
or (study_dir / "atomizer_spec.json").exists()
)
def get_study_topic(study_dir: Path) -> Optional[str]:
"""Get the topic folder name for a study, or None if in root."""
# Check if parent is a topic folder (not the root studies dir)
parent = study_dir.parent
if parent != STUDIES_DIR and parent.parent == STUDIES_DIR:
return parent.name
return None
def is_optimization_running(study_id: str) -> bool:
"""Check if an optimization process is currently running for a study.
Looks for Python processes running run_optimization.py with the study_id in the command line.
"""
try:
study_dir = resolve_study_path(study_id)
except HTTPException:
return False
for proc in psutil.process_iter(["pid", "name", "cmdline", "cwd"]):
try:
cmdline = proc.info.get("cmdline") or []
cmdline_str = " ".join(cmdline) if cmdline else ""
# Check if this is a Python process running run_optimization.py for this study
if "python" in cmdline_str.lower() and "run_optimization" in cmdline_str:
if study_id in cmdline_str or str(study_dir) in cmdline_str:
return True
except (psutil.NoSuchProcess, psutil.AccessDenied):
continue
return False
def get_accurate_study_status(
study_id: str, trial_count: int, total_trials: int, has_db: bool
) -> str:
"""Determine accurate study status based on multiple factors.
Status can be:
- not_started: No database or 0 trials
- running: Active process found
- paused: Has trials but no active process and not completed
- completed: Reached trial target
- failed: Has error indicators (future enhancement)
Args:
study_id: The study identifier
trial_count: Number of completed trials
total_trials: Target number of trials from config
has_db: Whether the study database exists
Returns:
Status string: "not_started", "running", "paused", or "completed"
"""
# No database or no trials = not started
if not has_db or trial_count == 0:
return "not_started"
# Check if we've reached the target
if trial_count >= total_trials:
return "completed"
# Check if process is actively running
if is_optimization_running(study_id):
return "running"
# Has trials but not running and not complete = paused
return "paused"
def _get_study_error_info(study_dir: Path, results_dir: Path) -> dict:
"""Get error information from study if any errors occurred.
Checks for:
1. error_status.json file (written by optimization process on error)
2. Failed trials in database
3. Error logs
Returns:
dict with keys: error, error_details, error_timestamp, current_trial, status_override
"""
error_info = {}
# Check for error_status.json (written by optimization process)
error_file = results_dir / "error_status.json"
if error_file.exists():
try:
with open(error_file) as f:
error_data = json.load(f)
error_info["error"] = error_data.get("error", "Unknown error")
error_info["error_details"] = error_data.get("details")
error_info["error_timestamp"] = error_data.get("timestamp")
error_info["current_trial"] = error_data.get("trial")
# If error is recent (within last 5 minutes), set status to failed
if error_data.get("timestamp"):
error_age = time.time() - error_data["timestamp"]
if error_age < 300: # 5 minutes
error_info["status_override"] = "failed"
except Exception:
pass
# Check for failed trials in database
study_db = results_dir / "study.db"
if study_db.exists() and "error" not in error_info:
try:
conn = sqlite3.connect(str(study_db), timeout=2.0)
cursor = conn.cursor()
# Check for FAIL state trials (Optuna uses 'FAIL' not 'FAILED')
cursor.execute("""
SELECT number, datetime_complete
FROM trials
WHERE state = 'FAIL'
ORDER BY datetime_complete DESC
LIMIT 1
""")
failed = cursor.fetchone()
if failed:
trial_number, fail_time = failed
error_info["error"] = f"Trial {trial_number} failed"
error_info["current_trial"] = trial_number
# Parse datetime to timestamp if available
if fail_time:
try:
from datetime import datetime
dt = datetime.fromisoformat(fail_time)
error_info["error_timestamp"] = dt.timestamp()
except Exception:
error_info["error_timestamp"] = int(time.time())
conn.close()
except Exception:
pass
# Check optimization log for errors
log_file = results_dir / "optimization.log"
if log_file.exists() and "error" not in error_info:
try:
# Read last 50 lines of log
with open(log_file, "r") as f:
lines = f.readlines()[-50:]
for line in reversed(lines):
line_lower = line.lower()
if "error" in line_lower or "failed" in line_lower or "exception" in line_lower:
error_info["error"] = line.strip()[:200] # Truncate long messages
error_info["error_timestamp"] = int(log_file.stat().st_mtime)
break
except Exception:
pass
return error_info
def _load_study_info(study_dir: Path, topic: Optional[str] = None) -> Optional[dict]:
"""Load study info from a study directory. Returns None if not a valid study."""
# Look for optimization config (check multiple locations)
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "1_setup" / "optimization_config.json"
if not config_file.exists():
return None
# Load config
with open(config_file) as f:
config = json.load(f)
# Check if results directory exists (support both 2_results and 3_results)
results_dir = study_dir / "2_results"
if not results_dir.exists():
results_dir = study_dir / "3_results"
# Check for Optuna database (Protocol 10) or JSON history (other protocols)
study_db = results_dir / "study.db"
history_file = results_dir / "optimization_history_incremental.json"
trial_count = 0
best_value = None
has_db = False
# Protocol 10: Read from Optuna SQLite database
if study_db.exists():
has_db = True
try:
# Use timeout to avoid blocking on locked databases
conn = sqlite3.connect(str(study_db), timeout=2.0)
cursor = conn.cursor()
# Get trial count and status
cursor.execute("SELECT COUNT(*) FROM trials WHERE state = 'COMPLETE'")
trial_count = cursor.fetchone()[0]
# Get best trial (for single-objective, or first objective for multi-objective)
if trial_count > 0:
cursor.execute("""
SELECT value FROM trial_values
WHERE trial_id IN (
SELECT trial_id FROM trials WHERE state = 'COMPLETE'
)
ORDER BY value ASC
LIMIT 1
""")
result = cursor.fetchone()
if result:
best_value = result[0]
conn.close()
except Exception as e:
print(f"Warning: Failed to read Optuna database for {study_dir.name}: {e}")
# Legacy: Read from JSON history
elif history_file.exists():
has_db = True
with open(history_file) as f:
history = json.load(f)
trial_count = len(history)
if history:
# Find best trial
best_trial = min(history, key=lambda x: x["objective"])
best_value = best_trial["objective"]
# Get total trials from config (supports both formats)
total_trials = (
config.get("optimization_settings", {}).get("n_trials")
or config.get("optimization", {}).get("n_trials")
or config.get("trials", {}).get("n_trials", 50)
)
# Get accurate status using process detection
status = get_accurate_study_status(study_dir.name, trial_count, total_trials, has_db)
# Get creation date from directory or config modification time
created_at = None
try:
# First try to get from database (most accurate)
if study_db.exists():
created_at = datetime.fromtimestamp(study_db.stat().st_mtime).isoformat()
elif config_file.exists():
created_at = datetime.fromtimestamp(config_file.stat().st_mtime).isoformat()
else:
created_at = datetime.fromtimestamp(study_dir.stat().st_ctime).isoformat()
except:
created_at = None
# Get last modified time
last_modified = None
try:
if study_db.exists():
last_modified = datetime.fromtimestamp(study_db.stat().st_mtime).isoformat()
elif history_file.exists():
last_modified = datetime.fromtimestamp(history_file.stat().st_mtime).isoformat()
except:
last_modified = None
return {
"id": study_dir.name,
"name": study_dir.name.replace("_", " ").title(),
"topic": topic, # NEW: topic field for grouping
"status": status,
"progress": {"current": trial_count, "total": total_trials},
"best_value": best_value,
"target": config.get("target", {}).get("value"),
"path": str(study_dir),
"created_at": created_at,
"last_modified": last_modified,
}
@router.get("/studies")
async def list_studies():
"""List all available optimization studies.
Supports both flat and nested folder structures:
- Flat: studies/study_name/
- Nested: studies/Topic/study_name/
Returns studies with 'topic' field for frontend grouping.
"""
try:
studies = []
if not STUDIES_DIR.exists():
return {"studies": []}
for item in STUDIES_DIR.iterdir():
if not item.is_dir():
continue
if item.name.startswith("."):
continue
# Check if this is a study (flat structure) or a topic folder (nested structure)
is_study = (item / "1_setup").exists() or (item / "optimization_config.json").exists()
if is_study:
# Flat structure: study directly in studies/
study_info = _load_study_info(item, topic=None)
if study_info:
studies.append(study_info)
else:
# Nested structure: this might be a topic folder
# Check if it contains study subdirectories
for sub_item in item.iterdir():
if not sub_item.is_dir():
continue
if sub_item.name.startswith("."):
continue
# Check if this subdirectory is a study
sub_is_study = (sub_item / "1_setup").exists() or (
sub_item / "optimization_config.json"
).exists()
if sub_is_study:
study_info = _load_study_info(sub_item, topic=item.name)
if study_info:
studies.append(study_info)
return {"studies": studies}
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to list studies: {str(e)}")
@router.get("/studies/{study_id}/status")
async def get_study_status(study_id: str):
"""Get detailed status of a specific study"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Load config (check multiple locations)
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "1_setup" / "optimization_config.json"
with open(config_file) as f:
config = json.load(f)
# Check for results (support both 2_results and 3_results)
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
history_file = results_dir / "optimization_history_incremental.json"
# Protocol 10: Read from Optuna database
if study_db.exists():
conn = sqlite3.connect(str(study_db))
cursor = conn.cursor()
# Get trial counts by state
cursor.execute("SELECT COUNT(*) FROM trials WHERE state = 'COMPLETE'")
trial_count = cursor.fetchone()[0]
cursor.execute("SELECT COUNT(*) FROM trials WHERE state = 'PRUNED'")
pruned_count = cursor.fetchone()[0]
# Get best trial (first objective for multi-objective)
best_trial = None
if trial_count > 0:
cursor.execute("""
SELECT t.trial_id, t.number, tv.value
FROM trials t
JOIN trial_values tv ON t.trial_id = tv.trial_id
WHERE t.state = 'COMPLETE'
ORDER BY tv.value ASC
LIMIT 1
""")
result = cursor.fetchone()
if result:
trial_id, trial_number, best_value = result
# Get parameters for this trial
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(trial_id,),
)
params = {row[0]: row[1] for row in cursor.fetchall()}
best_trial = {
"trial_number": trial_number,
"objective": best_value,
"design_variables": params,
"results": {"first_frequency": best_value},
}
conn.close()
total_trials = config.get("optimization_settings", {}).get("n_trials", 50)
status = get_accurate_study_status(study_id, trial_count, total_trials, True)
# Check for error status
error_info = _get_study_error_info(study_dir, results_dir)
return {
"study_id": study_id,
"status": error_info.get("status_override") or status,
"progress": {
"current": trial_count,
"total": total_trials,
"percentage": (trial_count / total_trials * 100) if total_trials > 0 else 0,
},
"best_trial": best_trial,
"pruned_trials": pruned_count,
"config": config,
"error": error_info.get("error"),
"error_details": error_info.get("error_details"),
"error_timestamp": error_info.get("error_timestamp"),
"current_trial": error_info.get("current_trial"),
}
# Legacy: Read from JSON history
if not history_file.exists():
return {
"study_id": study_id,
"status": "not_started",
"progress": {"current": 0, "total": config.get("trials", {}).get("n_trials", 50)},
"config": config,
}
with open(history_file) as f:
history = json.load(f)
trial_count = len(history)
total_trials = config.get("trials", {}).get("n_trials", 50)
# Find best trial
best_trial = None
if history:
best_trial = min(history, key=lambda x: x["objective"])
# Check for pruning data
pruning_file = results_dir / "pruning_history.json"
pruned_count = 0
if pruning_file.exists():
with open(pruning_file) as f:
pruning_history = json.load(f)
pruned_count = len(pruning_history)
status = "completed" if trial_count >= total_trials else "running"
# Check for error status
error_info = _get_study_error_info(study_dir, results_dir)
return {
"study_id": study_id,
"status": error_info.get("status_override") or status,
"progress": {
"current": trial_count,
"total": total_trials,
"percentage": (trial_count / total_trials * 100) if total_trials > 0 else 0,
},
"best_trial": best_trial,
"pruned_trials": pruned_count,
"config": config,
"error": error_info.get("error"),
"error_details": error_info.get("error_details"),
"error_timestamp": error_info.get("error_timestamp"),
"current_trial": error_info.get("current_trial"),
}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get study status: {str(e)}")
@router.get("/studies/{study_id}/history")
async def get_optimization_history(study_id: str, limit: Optional[int] = None):
"""Get optimization history (all trials)"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
history_file = results_dir / "optimization_history_incremental.json"
# Protocol 10: Read from Optuna database
if study_db.exists():
conn = sqlite3.connect(str(study_db))
cursor = conn.cursor()
# Get all completed trials FROM ALL STUDIES in the database
# This handles adaptive optimizations that create multiple Optuna studies
# (e.g., v11_fea for FEA trials, v11_iter1_nn for NN trials, etc.)
cursor.execute(
"""
SELECT t.trial_id, t.number, t.datetime_start, t.datetime_complete, s.study_name
FROM trials t
JOIN studies s ON t.study_id = s.study_id
WHERE t.state = 'COMPLETE'
ORDER BY t.datetime_start DESC
"""
+ (f" LIMIT {limit}" if limit else "")
)
trial_rows = cursor.fetchall()
trials = []
for trial_id, trial_num, start_time, end_time, study_name in trial_rows:
# Get objectives for this trial
cursor.execute(
"""
SELECT value
FROM trial_values
WHERE trial_id = ?
ORDER BY objective
""",
(trial_id,),
)
values = [row[0] for row in cursor.fetchall()]
# Get parameters for this trial
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(trial_id,),
)
params = {}
for param_name, param_value in cursor.fetchall():
try:
params[param_name] = float(param_value) if param_value is not None else None
except (ValueError, TypeError):
params[param_name] = param_value
# Get user attributes (extracted results: mass, frequency, stress, displacement, etc.)
cursor.execute(
"""
SELECT key, value_json
FROM trial_user_attributes
WHERE trial_id = ?
""",
(trial_id,),
)
user_attrs = {}
for key, value_json in cursor.fetchall():
try:
user_attrs[key] = json.loads(value_json)
except (ValueError, TypeError):
user_attrs[key] = value_json
# Extract ALL numeric metrics from user_attrs for results
# This ensures multi-objective studies show all Zernike metrics, RMS values, etc.
results = {}
excluded_keys = {"design_vars", "constraint_satisfied", "constraint_violations"}
for key, val in user_attrs.items():
if key in excluded_keys:
continue
# Include numeric values and lists of numbers
if isinstance(val, (int, float)):
results[key] = val
elif (
isinstance(val, list) and len(val) > 0 and isinstance(val[0], (int, float))
):
# For lists, store as-is (e.g., Zernike coefficients)
results[key] = val
elif key == "objectives" and isinstance(val, dict):
# Extract nested objectives dict (Zernike multi-objective studies)
for obj_key, obj_val in val.items():
if isinstance(obj_val, (int, float)):
results[obj_key] = obj_val
# Fallback to first frequency from objectives if available
if not results and len(values) > 0:
results["first_frequency"] = values[0]
# CRITICAL: Extract design_vars from user_attrs if stored there
# The optimization code does: trial.set_user_attr("design_vars", design_vars)
design_vars_from_attrs = user_attrs.get("design_vars", {})
# Merge with params (prefer user_attrs design_vars if available)
final_design_vars = (
{**params, **design_vars_from_attrs} if design_vars_from_attrs else params
)
# Extract source for FEA vs NN differentiation
source = user_attrs.get("source", "FEA") # Default to FEA for legacy studies
# Get iter_num from user_attrs if available (this is the actual iteration folder number)
iter_num = user_attrs.get("iter_num", None)
# Use iter_num if available, otherwise use trial_id as unique identifier
# trial_id is unique across all studies in the database
unique_trial_num = iter_num if iter_num is not None else trial_id
trials.append(
{
"trial_number": unique_trial_num,
"trial_id": trial_id, # Keep original for debugging
"optuna_trial_num": trial_num, # Keep original Optuna trial number
"objective": values[0] if len(values) > 0 else None, # Primary objective
"objectives": values
if len(values) > 1
else None, # All objectives for multi-objective
"design_variables": final_design_vars, # Use merged design vars
"results": results,
"user_attrs": user_attrs, # Include all user attributes
"source": source, # FEA or NN
"start_time": start_time,
"end_time": end_time,
"study_name": study_name, # Include for debugging
}
)
conn.close()
return {"trials": trials}
# Legacy: Read from JSON history
if not history_file.exists():
return {"trials": []}
with open(history_file) as f:
history = json.load(f)
# Apply limit if specified
if limit:
history = history[-limit:]
return {"trials": history}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get history: {str(e)}")
@router.get("/studies/{study_id}/pruning")
async def get_pruning_history(study_id: str):
"""Get pruning diagnostics from Optuna database or legacy JSON file"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
pruning_file = results_dir / "pruning_history.json"
# Protocol 10+: Read from Optuna database
if study_db.exists():
conn = sqlite3.connect(str(study_db))
cursor = conn.cursor()
# Get all pruned trials from Optuna database
cursor.execute("""
SELECT t.trial_id, t.number, t.datetime_start, t.datetime_complete
FROM trials t
WHERE t.state = 'PRUNED'
ORDER BY t.number DESC
""")
pruned_rows = cursor.fetchall()
pruned_trials = []
for trial_id, trial_num, start_time, end_time in pruned_rows:
# Get parameters for this trial
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(trial_id,),
)
params = {row[0]: row[1] for row in cursor.fetchall()}
# Get user attributes (may contain pruning cause)
cursor.execute(
"""
SELECT key, value_json
FROM trial_user_attributes
WHERE trial_id = ?
""",
(trial_id,),
)
user_attrs = {}
for key, value_json in cursor.fetchall():
try:
user_attrs[key] = json.loads(value_json)
except (ValueError, TypeError):
user_attrs[key] = value_json
pruned_trials.append(
{
"trial_number": trial_num,
"params": params,
"pruning_cause": user_attrs.get("pruning_cause", "Unknown"),
"start_time": start_time,
"end_time": end_time,
}
)
conn.close()
return {"pruned_trials": pruned_trials, "count": len(pruned_trials)}
# Legacy: Read from JSON history
if not pruning_file.exists():
return {"pruned_trials": [], "count": 0}
with open(pruning_file) as f:
pruning_history = json.load(f)
return {"pruned_trials": pruning_history, "count": len(pruning_history)}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get pruning history: {str(e)}")
def _infer_objective_unit(objective: Dict) -> str:
"""Infer unit from objective name and description"""
name = objective.get("name", "").lower()
desc = objective.get("description", "").lower()
# Common unit patterns
if "frequency" in name or "hz" in desc:
return "Hz"
elif "stiffness" in name or "n/mm" in desc:
return "N/mm"
elif "mass" in name or "kg" in desc:
return "kg"
elif "stress" in name or "mpa" in desc or "pa" in desc:
return "MPa"
elif "displacement" in name or "mm" in desc:
return "mm"
elif "force" in name or "newton" in desc:
return "N"
elif "%" in desc or "percent" in desc:
return "%"
# Check if unit is explicitly mentioned in description (e.g., "(N/mm)")
import re
unit_match = re.search(r"\(([^)]+)\)", desc)
if unit_match:
return unit_match.group(1)
return "" # No unit found
@router.get("/studies/{study_id}/metadata")
async def get_study_metadata(study_id: str):
"""Read optimization_config.json for objectives, design vars, units (Protocol 13)"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Load config (check multiple locations)
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "1_setup" / "optimization_config.json"
if not config_file.exists():
raise HTTPException(
status_code=404, detail=f"Config file not found for study {study_id}"
)
with open(config_file) as f:
config = json.load(f)
# Enhance objectives with inferred units if not present
objectives = config.get("objectives", [])
for obj in objectives:
if "unit" not in obj or not obj["unit"]:
obj["unit"] = _infer_objective_unit(obj)
# Get sampler/algorithm info
optimization = config.get("optimization", {})
algorithm = optimization.get("algorithm", "TPE")
# Map algorithm names to Optuna sampler names for frontend display
sampler_map = {
"CMA-ES": "CmaEsSampler",
"cma-es": "CmaEsSampler",
"cmaes": "CmaEsSampler",
"TPE": "TPESampler",
"tpe": "TPESampler",
"NSGA-II": "NSGAIISampler",
"nsga-ii": "NSGAIISampler",
"NSGA-III": "NSGAIIISampler",
"Random": "RandomSampler",
}
sampler = sampler_map.get(algorithm, algorithm)
return {
"objectives": objectives,
"design_variables": config.get("design_variables", []),
"constraints": config.get("constraints", []),
"study_name": config.get("study_name", study_id),
"description": config.get("description", ""),
"sampler": sampler,
"algorithm": algorithm,
"n_trials": optimization.get("n_trials", 100),
}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get study metadata: {str(e)}")
@router.get("/studies/{study_id}/optimizer-state")
async def get_optimizer_state(study_id: str):
"""
Read realtime optimizer state from multiple sources:
1. dashboard_state.json (written by optimization scripts)
2. intelligent_optimizer/optimizer_state.json (Protocol 13)
3. Computed state from database (fallback)
"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
# Priority 1: Check for dashboard_state.json (written by optimization script)
dashboard_state_file = results_dir / "dashboard_state.json"
if dashboard_state_file.exists():
try:
with open(dashboard_state_file) as f:
state = json.load(f)
return {"available": True, "source": "dashboard_state", **state}
except Exception:
pass
# Priority 2: Check intelligent_optimizer state
imso_state_file = results_dir / "intelligent_optimizer" / "optimizer_state.json"
if imso_state_file.exists():
try:
with open(imso_state_file) as f:
state = json.load(f)
return {"available": True, "source": "intelligent_optimizer", **state}
except Exception:
pass
# Priority 3: Compute state from config and database
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "1_setup" / "optimization_config.json"
if config_file.exists():
with open(config_file) as f:
config = json.load(f)
# Extract sampler info
optimizer_config = config.get("optimizer", {})
sampler_name = optimizer_config.get("sampler", "TPESampler")
n_trials = optimizer_config.get("n_trials", config.get("n_trials", 100))
# Get trial count from database
study_db = results_dir / "study.db"
completed_trials = 0
best_value = None
if study_db.exists():
try:
conn = sqlite3.connect(str(study_db), timeout=2.0)
cursor = conn.cursor()
cursor.execute("SELECT COUNT(*) FROM trials WHERE state = 'COMPLETE'")
completed_trials = cursor.fetchone()[0]
# Get best value
cursor.execute("""
SELECT MIN(value) FROM trial_values
WHERE trial_id IN (SELECT trial_id FROM trials WHERE state = 'COMPLETE')
""")
result = cursor.fetchone()
if result and result[0] is not None:
best_value = result[0]
conn.close()
except Exception:
pass
# Determine phase
if completed_trials == 0:
phase = "initializing"
phase_description = "Waiting for first trial"
phase_progress = 0.0
elif completed_trials < 10:
phase = "exploration"
phase_description = "Initial random sampling"
phase_progress = completed_trials / 10
elif completed_trials < n_trials * 0.5:
phase = "exploitation"
phase_description = "Focusing on promising regions"
phase_progress = (completed_trials - 10) / (n_trials * 0.5 - 10)
elif completed_trials < n_trials * 0.9:
phase = "refinement"
phase_description = "Fine-tuning best solutions"
phase_progress = (completed_trials - n_trials * 0.5) / (n_trials * 0.4)
else:
phase = "convergence"
phase_description = "Near completion"
phase_progress = (completed_trials - n_trials * 0.9) / (n_trials * 0.1)
# Build objectives list from config
objectives = []
if "objectives" in config:
for obj in config["objectives"]:
objectives.append(
{
"name": obj.get("name", "objective"),
"direction": obj.get("direction", "minimize"),
"current_best": best_value if len(objectives) == 0 else None,
"unit": obj.get("units", ""),
}
)
# Sampler descriptions
sampler_descriptions = {
"TPESampler": "Tree-structured Parzen Estimator - Bayesian optimization using kernel density estimation",
"NSGAIISampler": "NSGA-II - Multi-objective genetic algorithm with non-dominated sorting",
"NSGAIIISampler": "NSGA-III - Reference-point based multi-objective optimization",
"CmaEsSampler": "CMA-ES - Covariance Matrix Adaptation Evolution Strategy",
"RandomSampler": "Random sampling - Uniform random search across parameter space",
"QMCSampler": "Quasi-Monte Carlo - Low-discrepancy sequence sampling",
}
return {
"available": True,
"source": "computed",
"phase": phase,
"phase_description": phase_description,
"phase_progress": min(1.0, max(0.0, phase_progress)),
"current_strategy": f"{sampler_name} sampling",
"sampler": {
"name": sampler_name,
"description": sampler_descriptions.get(
sampler_name, f"{sampler_name} optimization algorithm"
),
},
"objectives": objectives,
"plan": {
"total_phases": 4,
"current_phase": {
"initializing": 0,
"exploration": 1,
"exploitation": 2,
"refinement": 3,
"convergence": 4,
}.get(phase, 0),
"phases": ["Exploration", "Exploitation", "Refinement", "Convergence"],
},
"completed_trials": completed_trials,
"total_trials": n_trials,
}
return {"available": False}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get optimizer state: {str(e)}")
@router.get("/studies/{study_id}/pareto-front")
async def get_pareto_front(study_id: str):
"""Get Pareto-optimal solutions for multi-objective studies (Protocol 13)"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
if not study_db.exists():
return {"is_multi_objective": False, "pareto_front": []}
# Import optuna here to avoid loading it for all endpoints
import optuna
storage = optuna.storages.RDBStorage(f"sqlite:///{study_db}")
study = optuna.load_study(study_name=study_id, storage=storage)
# Check if multi-objective
if len(study.directions) == 1:
return {"is_multi_objective": False, "pareto_front": []}
# Get Pareto front
pareto_trials = study.best_trials
return {
"is_multi_objective": True,
"pareto_front": [
{
"trial_number": t.number,
"values": t.values,
"params": t.params,
"user_attrs": dict(t.user_attrs),
"constraint_satisfied": t.user_attrs.get("constraint_satisfied", True),
}
for t in pareto_trials
],
}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get Pareto front: {str(e)}")
@router.get("/studies/{study_id}/nn-pareto-front")
async def get_nn_pareto_front(study_id: str):
"""Get NN surrogate Pareto front from nn_pareto_front.json"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
nn_pareto_file = results_dir / "nn_pareto_front.json"
if not nn_pareto_file.exists():
return {"has_nn_results": False, "pareto_front": []}
with open(nn_pareto_file) as f:
nn_pareto = json.load(f)
# Transform to match Trial interface format
transformed = []
for trial in nn_pareto:
transformed.append(
{
"trial_number": trial.get("trial_number"),
"values": [trial.get("mass"), trial.get("frequency")],
"params": trial.get("params", {}),
"user_attrs": {
"source": "NN",
"feasible": trial.get("feasible", False),
"predicted_stress": trial.get("predicted_stress"),
"predicted_displacement": trial.get("predicted_displacement"),
"mass": trial.get("mass"),
"frequency": trial.get("frequency"),
},
"constraint_satisfied": trial.get("feasible", False),
"source": "NN",
}
)
return {"has_nn_results": True, "pareto_front": transformed, "count": len(transformed)}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get NN Pareto front: {str(e)}")
@router.get("/studies/{study_id}/nn-state")
async def get_nn_optimization_state(study_id: str):
"""Get NN optimization state/summary from nn_optimization_state.json"""
try:
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
nn_state_file = results_dir / "nn_optimization_state.json"
if not nn_state_file.exists():
return {"has_nn_state": False}
with open(nn_state_file) as f:
state = json.load(f)
return {
"has_nn_state": True,
"total_fea_count": state.get("total_fea_count", 0),
"total_nn_count": state.get("total_nn_count", 0),
"pareto_front_size": state.get("pareto_front_size", 0),
"best_mass": state.get("best_mass"),
"best_frequency": state.get("best_frequency"),
"timestamp": state.get("timestamp"),
}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get NN state: {str(e)}")
@router.post("/studies")
async def create_study(
config: str = Form(...),
prt_file: Optional[UploadFile] = File(None),
sim_file: Optional[UploadFile] = File(None),
fem_file: Optional[UploadFile] = File(None),
):
"""
Create a new optimization study
Accepts:
- config: JSON string with study configuration
- prt_file: NX part file (optional if using existing study)
- sim_file: NX simulation file (optional)
- fem_file: NX FEM file (optional)
"""
try:
# Parse config
config_data = json.loads(config)
study_name = config_data.get("name") # Changed from study_name to name to match frontend
if not study_name:
raise HTTPException(status_code=400, detail="name is required in config")
# Create study directory structure
study_dir = STUDIES_DIR / study_name
if study_dir.exists():
raise HTTPException(status_code=400, detail=f"Study {study_name} already exists")
setup_dir = study_dir / "1_setup"
model_dir = setup_dir / "model"
results_dir = study_dir / "2_results"
setup_dir.mkdir(parents=True, exist_ok=True)
model_dir.mkdir(parents=True, exist_ok=True)
results_dir.mkdir(parents=True, exist_ok=True)
# Save config file
config_file = setup_dir / "optimization_config.json"
with open(config_file, "w") as f:
json.dump(config_data, f, indent=2)
# Save uploaded files
files_saved = {}
if prt_file:
prt_path = model_dir / prt_file.filename
with open(prt_path, "wb") as f:
content = await prt_file.read()
f.write(content)
files_saved["prt_file"] = str(prt_path)
if sim_file:
sim_path = model_dir / sim_file.filename
with open(sim_path, "wb") as f:
content = await sim_file.read()
f.write(content)
files_saved["sim_file"] = str(sim_path)
if fem_file:
fem_path = model_dir / fem_file.filename
with open(fem_path, "wb") as f:
content = await fem_file.read()
f.write(content)
files_saved["fem_file"] = str(fem_path)
return JSONResponse(
status_code=201,
content={
"status": "created",
"study_id": study_name,
"study_path": str(study_dir),
"config_path": str(config_file),
"files_saved": files_saved,
"message": f"Study {study_name} created successfully. Ready to run optimization.",
},
)
except json.JSONDecodeError as e:
raise HTTPException(status_code=400, detail=f"Invalid JSON in config: {str(e)}")
except Exception as e:
# Clean up on error
if "study_dir" in locals() and study_dir.exists():
shutil.rmtree(study_dir)
raise HTTPException(status_code=500, detail=f"Failed to create study: {str(e)}")
@router.post("/studies/{study_id}/convert-mesh")
async def convert_study_mesh(study_id: str):
"""
Convert study mesh to GLTF for 3D visualization
Creates a web-viewable 3D model with FEA results as vertex colors
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Import mesh converter
sys.path.append(str(Path(__file__).parent.parent.parent.parent.parent))
from optimization_engine.nx.mesh_converter import convert_study_mesh
# Convert mesh
output_path = convert_study_mesh(study_dir)
if output_path and output_path.exists():
return {
"status": "success",
"gltf_path": str(output_path),
"gltf_url": f"/api/optimization/studies/{study_id}/mesh/model.gltf",
"metadata_url": f"/api/optimization/studies/{study_id}/mesh/model.json",
"message": "Mesh converted successfully",
}
else:
raise HTTPException(status_code=500, detail="Mesh conversion failed")
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to convert mesh: {str(e)}")
@router.get("/studies/{study_id}/mesh/{filename}")
async def get_mesh_file(study_id: str, filename: str):
"""
Serve GLTF mesh files and metadata
Supports .gltf, .bin, and .json files
"""
try:
# Validate filename to prevent directory traversal
if ".." in filename or "/" in filename or "\\" in filename:
raise HTTPException(status_code=400, detail="Invalid filename")
study_dir = resolve_study_path(study_id)
visualization_dir = study_dir / "3_visualization"
file_path = visualization_dir / filename
if not file_path.exists():
raise HTTPException(status_code=404, detail=f"File {filename} not found")
# Determine content type
suffix = file_path.suffix.lower()
content_types = {
".gltf": "model/gltf+json",
".bin": "application/octet-stream",
".json": "application/json",
".glb": "model/gltf-binary",
}
content_type = content_types.get(suffix, "application/octet-stream")
return FileResponse(path=str(file_path), media_type=content_type, filename=filename)
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"File not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to serve mesh file: {str(e)}")
@router.get("/studies/{study_id}/optuna-url")
async def get_optuna_dashboard_url(study_id: str):
"""
Get the Optuna dashboard URL for a specific study.
Returns the URL to access the study in Optuna dashboard.
The Optuna dashboard should be started with a relative path from the Atomizer root:
sqlite:///studies/{study_id}/2_results/study.db
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
if not study_db.exists():
raise HTTPException(
status_code=404, detail=f"No Optuna database found for study {study_id}"
)
# Get the study name from the database (may differ from folder name)
import optuna
storage = optuna.storages.RDBStorage(f"sqlite:///{study_db}")
studies = storage.get_all_studies()
if not studies:
raise HTTPException(
status_code=404, detail=f"No Optuna study found in database for {study_id}"
)
# Use the actual study name from the database
optuna_study_name = studies[0].study_name
# Return URL info for the frontend
# The dashboard should be running on port 8081 with the correct database
return {
"study_id": study_id,
"optuna_study_name": optuna_study_name,
"database_path": f"studies/{study_id}/2_results/study.db",
"dashboard_url": f"http://localhost:8081/dashboard/studies/{studies[0]._study_id}",
"dashboard_base": "http://localhost:8081",
"note": "Optuna dashboard must be started with: sqlite:///studies/{study_id}/2_results/study.db",
}
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get Optuna URL: {str(e)}")
@router.post("/studies/{study_id}/generate-report")
async def generate_report(
study_id: str, format: str = "markdown", include_llm_summary: bool = False
):
"""
Generate an optimization report in the specified format
Args:
study_id: Study identifier
format: Report format ('markdown', 'html', or 'pdf')
include_llm_summary: Whether to include LLM-generated executive summary
Returns:
Information about the generated report including download URL
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Validate format
valid_formats = ["markdown", "md", "html", "pdf"]
if format.lower() not in valid_formats:
raise HTTPException(
status_code=400,
detail=f"Invalid format. Must be one of: {', '.join(valid_formats)}",
)
# Import report generator
sys.path.append(str(Path(__file__).parent.parent.parent.parent.parent))
from optimization_engine.future.report_generator import generate_study_report
# Generate report
output_path = generate_study_report(
study_dir=study_dir,
output_format=format.lower(),
include_llm_summary=include_llm_summary,
)
if output_path and output_path.exists():
# Get relative path for URL
rel_path = output_path.relative_to(study_dir)
return {
"status": "success",
"format": format,
"file_path": str(output_path),
"download_url": f"/api/optimization/studies/{study_id}/reports/{output_path.name}",
"file_size": output_path.stat().st_size,
"message": f"Report generated successfully in {format} format",
}
else:
raise HTTPException(status_code=500, detail="Report generation failed")
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to generate report: {str(e)}")
@router.get("/studies/{study_id}/reports/{filename}")
async def download_report(study_id: str, filename: str):
"""
Download a generated report file
Args:
study_id: Study identifier
filename: Report filename
Returns:
Report file for download
"""
try:
# Validate filename to prevent directory traversal
if ".." in filename or "/" in filename or "\\" in filename:
raise HTTPException(status_code=400, detail="Invalid filename")
study_dir = resolve_study_path(study_id)
results_dir = get_results_dir(study_dir)
file_path = results_dir / filename
if not file_path.exists():
raise HTTPException(status_code=404, detail=f"Report file {filename} not found")
# Determine content type
suffix = file_path.suffix.lower()
content_types = {
".md": "text/markdown",
".html": "text/html",
".pdf": "application/pdf",
".json": "application/json",
}
content_type = content_types.get(suffix, "application/octet-stream")
return FileResponse(
path=str(file_path),
media_type=content_type,
filename=filename,
headers={"Content-Disposition": f"attachment; filename={filename}"},
)
except FileNotFoundError:
raise HTTPException(status_code=404, detail=f"Report file not found")
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to download report: {str(e)}")
@router.get("/studies/{study_id}/console")
async def get_console_output(study_id: str, lines: int = 200):
"""
Get the latest console output/logs from the optimization run
Args:
study_id: Study identifier
lines: Number of lines to return (default: 200)
Returns:
JSON with console output lines
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Look for log files in various locations
log_paths = [
study_dir / "optimization.log",
study_dir / "2_results" / "optimization.log",
study_dir / "3_results" / "optimization.log",
study_dir / "run.log",
]
log_content = None
log_path_used = None
for log_path in log_paths:
if log_path.exists():
log_path_used = log_path
break
if log_path_used is None:
return {
"lines": [],
"total_lines": 0,
"log_file": None,
"message": "No log file found. Optimization may not have started yet.",
}
# Read the last N lines efficiently
with open(log_path_used, "r", encoding="utf-8", errors="replace") as f:
all_lines = f.readlines()
# Get last N lines
last_lines = all_lines[-lines:] if len(all_lines) > lines else all_lines
# Clean up lines (remove trailing newlines)
last_lines = [line.rstrip("\n\r") for line in last_lines]
return {
"lines": last_lines,
"total_lines": len(all_lines),
"displayed_lines": len(last_lines),
"log_file": str(log_path_used),
"timestamp": datetime.now().isoformat(),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to read console output: {str(e)}")
@router.get("/studies/{study_id}/report")
async def get_study_report(study_id: str):
"""
Get the STUDY_REPORT.md file content for a study
Args:
study_id: Study identifier
Returns:
JSON with the markdown content
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Look for STUDY_REPORT.md in the study root
report_path = study_dir / "STUDY_REPORT.md"
if not report_path.exists():
raise HTTPException(status_code=404, detail="No STUDY_REPORT.md found for this study")
with open(report_path, "r", encoding="utf-8") as f:
content = f.read()
return {"content": content, "path": str(report_path), "study_id": study_id}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to read study report: {str(e)}")
# ============================================================================
# Study README and Config Endpoints
# ============================================================================
@router.get("/studies/{study_id}/readme")
async def get_study_readme(study_id: str):
"""
Get the README.md file content for a study (from 1_setup folder)
Args:
study_id: Study identifier
Returns:
JSON with the markdown content
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Look for README.md in various locations
readme_paths = [
study_dir / "README.md",
study_dir / "1_setup" / "README.md",
study_dir / "readme.md",
]
readme_content = None
readme_path = None
for path in readme_paths:
if path.exists():
readme_path = path
with open(path, "r", encoding="utf-8") as f:
readme_content = f.read()
break
if readme_content is None:
# Generate a basic README from config if none exists
config_file = study_dir / "1_setup" / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "optimization_config.json"
if config_file.exists():
with open(config_file) as f:
config = json.load(f)
readme_content = f"""# {config.get("study_name", study_id)}
{config.get("description", "No description available.")}
## Design Variables
{chr(10).join([f"- **{dv['name']}**: {dv.get('min', '?')} - {dv.get('max', '?')} {dv.get('units', '')}" for dv in config.get("design_variables", [])])}
## Objectives
{chr(10).join([f"- **{obj['name']}**: {obj.get('description', '')} ({obj.get('direction', 'minimize')})" for obj in config.get("objectives", [])])}
"""
else:
readme_content = f"# {study_id}\n\nNo README or configuration found for this study."
return {
"content": readme_content,
"path": str(readme_path) if readme_path else None,
"study_id": study_id,
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to read README: {str(e)}")
@router.get("/studies/{study_id}/image/{image_path:path}")
async def get_study_image(study_id: str, image_path: str):
"""
Serve images from a study directory.
Supports images in:
- study_dir/image.png
- study_dir/1_setup/image.png
- study_dir/3_results/image.png
- study_dir/assets/image.png
Args:
study_id: Study identifier
image_path: Relative path to the image within the study
Returns:
FileResponse with the image
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Sanitize path to prevent directory traversal
image_path = image_path.replace("..", "").lstrip("/")
# Try multiple locations for the image
possible_paths = [
study_dir / image_path,
study_dir / "1_setup" / image_path,
study_dir / "3_results" / image_path,
study_dir / "2_results" / image_path,
study_dir / "assets" / image_path,
]
image_file = None
for path in possible_paths:
if path.exists() and path.is_file():
image_file = path
break
if image_file is None:
raise HTTPException(status_code=404, detail=f"Image not found: {image_path}")
# Determine media type
suffix = image_file.suffix.lower()
media_types = {
".png": "image/png",
".jpg": "image/jpeg",
".jpeg": "image/jpeg",
".gif": "image/gif",
".svg": "image/svg+xml",
".webp": "image/webp",
}
media_type = media_types.get(suffix, "application/octet-stream")
return FileResponse(image_file, media_type=media_type)
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to serve image: {str(e)}")
@router.get("/studies/{study_id:path}/config")
async def get_study_config(study_id: str):
"""
Get the study configuration - reads from atomizer_spec.json (v2.0) first,
falls back to legacy optimization_config.json if not found.
Args:
study_id: Study identifier
Returns:
JSON with the complete configuration in a unified format
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Priority 1: atomizer_spec.json (v2.0 unified format)
spec_file = study_dir / "atomizer_spec.json"
if spec_file.exists():
with open(spec_file) as f:
spec = json.load(f)
# Transform AtomizerSpec to the expected config format
config = _transform_spec_to_config(spec, study_id)
return {
"config": config,
"path": str(spec_file),
"study_id": study_id,
"source": "atomizer_spec",
}
# Priority 2: Legacy optimization_config.json
config_file = study_dir / "1_setup" / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
raise HTTPException(
status_code=404, detail=f"Config file not found for study {study_id}"
)
with open(config_file) as f:
config = json.load(f)
return {
"config": config,
"path": str(config_file),
"study_id": study_id,
"source": "legacy_config",
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to read config: {str(e)}")
def _transform_spec_to_config(spec: dict, study_id: str) -> dict:
"""Transform AtomizerSpec v2.0 format to legacy config format for backwards compatibility."""
meta = spec.get("meta", {})
model = spec.get("model", {})
optimization = spec.get("optimization", {})
# Transform design variables
design_variables = []
for dv in spec.get("design_variables", []):
bounds = dv.get("bounds", {})
design_variables.append(
{
"name": dv.get("name"),
"expression_name": dv.get("expression_name"),
"type": "float" if dv.get("type") == "continuous" else dv.get("type", "float"),
"min": bounds.get("min"),
"max": bounds.get("max"),
"low": bounds.get("min"), # Alias for compatibility
"high": bounds.get("max"), # Alias for compatibility
"baseline": dv.get("baseline"),
"unit": dv.get("units"),
"units": dv.get("units"),
"enabled": dv.get("enabled", True),
}
)
# Transform objectives
objectives = []
for obj in spec.get("objectives", []):
source = obj.get("source", {})
objectives.append(
{
"name": obj.get("name"),
"direction": obj.get("direction", "minimize"),
"weight": obj.get("weight", 1.0),
"target": obj.get("target"),
"unit": obj.get("units"),
"units": obj.get("units"),
"extractor_id": source.get("extractor_id"),
"output_key": source.get("output_key"),
}
)
# Transform constraints
constraints = []
for con in spec.get("constraints", []):
constraints.append(
{
"name": con.get("name"),
"type": _operator_to_type(con.get("operator", "<=")),
"operator": con.get("operator"),
"max_value": con.get("threshold") if con.get("operator") in ["<=", "<"] else None,
"min_value": con.get("threshold") if con.get("operator") in [">=", ">"] else None,
"bound": con.get("threshold"),
"unit": con.get("units"),
"units": con.get("units"),
}
)
# Transform extractors
extractors = []
for ext in spec.get("extractors", []):
extractors.append(
{
"name": ext.get("name"),
"type": ext.get("type"),
"builtin": ext.get("builtin", True),
"config": ext.get("config", {}),
"outputs": ext.get("outputs", []),
}
)
# Get algorithm info
algorithm = optimization.get("algorithm", {})
budget = optimization.get("budget", {})
# Build the config in legacy format
config = {
"study_name": meta.get("study_name", study_id),
"description": meta.get("description", ""),
"version": meta.get("version", "2.0"),
"design_variables": design_variables,
"objectives": objectives,
"constraints": constraints,
"extractors": extractors,
"optimization": {
"algorithm": algorithm.get("type", "TPE"),
"n_trials": budget.get("max_trials", 100),
"max_time_hours": budget.get("max_time_hours"),
"convergence_patience": budget.get("convergence_patience"),
},
"optimization_settings": {
"sampler": algorithm.get("type", "TPE"),
"n_trials": budget.get("max_trials", 100),
},
"algorithm": {
"name": "Optuna",
"sampler": algorithm.get("type", "TPE"),
"n_trials": budget.get("max_trials", 100),
},
"model": model,
"sim_file": model.get("sim", {}).get("path")
if isinstance(model.get("sim"), dict)
else None,
}
return config
def _operator_to_type(operator: str) -> str:
"""Convert constraint operator to legacy type string."""
mapping = {"<=": "le", "<": "le", ">=": "ge", ">": "ge", "==": "eq", "=": "eq"}
return mapping.get(operator, "le")
# ============================================================================
# Process Control Endpoints
# ============================================================================
# Track running processes by study_id
_running_processes: Dict[str, int] = {}
# Track paused processes by study_id
_paused_processes: Dict[str, bool] = {}
def _find_optimization_process(study_id: str) -> Optional[psutil.Process]:
"""Find a running optimization process for a given study.
Uses multiple detection strategies:
1. Check tracked processes dictionary (most reliable)
2. Check process working directory (Windows-friendly)
3. Check cmdline for script names
"""
study_dir = resolve_study_path(study_id)
study_dir_str = str(study_dir).lower()
study_dir_normalized = study_dir_str.replace("/", "\\")
# Strategy 1: Check tracked processes first (most reliable)
if study_id in _running_processes:
tracked_pid = _running_processes[study_id]
try:
proc = psutil.Process(tracked_pid)
if proc.is_running() and proc.status() != psutil.STATUS_ZOMBIE:
return proc
else:
# Process died, clean up tracking
del _running_processes[study_id]
except (psutil.NoSuchProcess, psutil.AccessDenied):
del _running_processes[study_id]
# Strategy 2 & 3: Scan all Python processes
for proc in psutil.process_iter(["pid", "name", "cmdline", "cwd"]):
try:
# Only check Python processes
proc_name = (proc.info.get("name") or "").lower()
if "python" not in proc_name:
continue
cmdline = proc.info.get("cmdline") or []
cmdline_str = " ".join(cmdline) if cmdline else ""
cmdline_lower = cmdline_str.lower()
# Check if this is an optimization script (run_optimization.py or run_sat_optimization.py)
is_opt_script = (
"run_optimization" in cmdline_lower
or "run_sat_optimization" in cmdline_lower
or "run_imso" in cmdline_lower
)
if not is_opt_script:
continue
# Strategy 2: Check CWD (most reliable on Windows)
try:
proc_cwd = proc.cwd().lower().replace("/", "\\")
if proc_cwd == study_dir_normalized or study_dir_normalized in proc_cwd:
# Track this process for future lookups
_running_processes[study_id] = proc.pid
return proc
except (psutil.NoSuchProcess, psutil.AccessDenied, OSError):
pass
# Strategy 3: Check cmdline for study path or study_id
cmdline_normalized = cmdline_lower.replace("/", "\\")
if study_dir_normalized in cmdline_normalized:
_running_processes[study_id] = proc.pid
return proc
# Also check if study_id appears in cmdline (e.g., as part of path)
if study_id.lower() in cmdline_lower:
_running_processes[study_id] = proc.pid
return proc
except (psutil.NoSuchProcess, psutil.AccessDenied, psutil.ZombieProcess):
continue
return None
@router.get("/studies/{study_id}/process")
async def get_process_status(study_id: str):
"""
Get the process status for a study's optimization run
Args:
study_id: Study identifier
Returns:
JSON with process status (is_running, pid, iteration counts)
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Check if process is running
proc = _find_optimization_process(study_id)
is_running = proc is not None
pid = proc.pid if proc else None
# Get iteration counts from database
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
fea_count = 0
nn_count = 0
iteration = None
total_trials = None
time_per_trial = None
eta_seconds = None
eta_formatted = None
rate_per_hour = None
start_time = None
# Try to get total_trials from config
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "1_setup" / "optimization_config.json"
if config_file.exists():
try:
with open(config_file) as f:
config = json.load(f)
total_trials = config.get("optimizer", {}).get("n_trials")
if not total_trials:
total_trials = config.get("n_trials")
except Exception:
pass
if study_db.exists():
try:
conn = sqlite3.connect(str(study_db))
cursor = conn.cursor()
# Count FEA trials (from main study or studies with "_fea" suffix)
cursor.execute("""
SELECT COUNT(*) FROM trials t
JOIN studies s ON t.study_id = s.study_id
WHERE t.state = 'COMPLETE'
AND (s.study_name LIKE '%_fea' OR s.study_name NOT LIKE '%_nn%')
""")
fea_count = cursor.fetchone()[0]
# Count NN trials
cursor.execute("""
SELECT COUNT(*) FROM trials t
JOIN studies s ON t.study_id = s.study_id
WHERE t.state = 'COMPLETE'
AND s.study_name LIKE '%_nn%'
""")
nn_count = cursor.fetchone()[0]
# Try to get current iteration from study names
cursor.execute("""
SELECT study_name FROM studies
WHERE study_name LIKE '%_iter%'
ORDER BY study_name DESC LIMIT 1
""")
result = cursor.fetchone()
if result:
import re
match = re.search(r"iter(\d+)", result[0])
if match:
iteration = int(match.group(1))
# Calculate ETA from trial timestamps
# Get timestamps from trial_user_attributes or trial datetime_complete
cursor.execute("""
SELECT datetime_complete FROM trials
WHERE state = 'COMPLETE' AND datetime_complete IS NOT NULL
ORDER BY datetime_complete DESC
LIMIT 20
""")
timestamps = cursor.fetchall()
if len(timestamps) >= 2:
from datetime import datetime as dt
try:
# Parse timestamps and calculate average time between trials
times = []
for ts in timestamps:
if ts[0]:
# Handle different timestamp formats
ts_str = ts[0]
try:
times.append(dt.fromisoformat(ts_str.replace("Z", "+00:00")))
except ValueError:
try:
times.append(dt.strptime(ts_str, "%Y-%m-%d %H:%M:%S.%f"))
except ValueError:
times.append(dt.strptime(ts_str, "%Y-%m-%d %H:%M:%S"))
if len(times) >= 2:
# Sort ascending and calculate time differences
times.sort()
diffs = [
(times[i + 1] - times[i]).total_seconds()
for i in range(len(times) - 1)
]
# Filter out outliers (e.g., breaks in optimization)
diffs = [
d for d in diffs if d > 0 and d < 7200
] # Max 2 hours between trials
if diffs:
time_per_trial = sum(diffs) / len(diffs)
rate_per_hour = 3600 / time_per_trial if time_per_trial > 0 else 0
# Calculate ETA
completed = fea_count + nn_count
if total_trials and completed < total_trials:
remaining = total_trials - completed
eta_seconds = time_per_trial * remaining
# Format ETA nicely
if eta_seconds < 60:
eta_formatted = f"{int(eta_seconds)}s"
elif eta_seconds < 3600:
eta_formatted = f"{int(eta_seconds / 60)}m"
else:
hours = int(eta_seconds / 3600)
minutes = int((eta_seconds % 3600) / 60)
eta_formatted = f"{hours}h {minutes}m"
# Get start time (first trial)
if times:
start_time = times[0].isoformat()
except Exception as e:
print(f"Warning: Failed to calculate ETA: {e}")
conn.close()
except Exception as e:
print(f"Warning: Failed to read database for process status: {e}")
# Check if paused
is_paused = _paused_processes.get(study_id, False) if is_running else False
return {
"is_running": is_running,
"is_paused": is_paused,
"pid": pid,
"iteration": iteration,
"fea_count": fea_count,
"nn_count": nn_count,
"total_trials": total_trials,
"completed_trials": fea_count + nn_count,
"time_per_trial_seconds": round(time_per_trial, 1) if time_per_trial else None,
"eta_seconds": round(eta_seconds) if eta_seconds else None,
"eta_formatted": eta_formatted,
"rate_per_hour": round(rate_per_hour, 2) if rate_per_hour else None,
"start_time": start_time,
"study_id": study_id,
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get process status: {str(e)}")
class StartOptimizationRequest(BaseModel):
freshStart: bool = False
maxIterations: int = 100
trials: int = 300 # For SAT scripts
feaBatchSize: int = 5
tuneTrials: int = 30
ensembleSize: int = 3
patience: int = 5
def _detect_script_type(script_path: Path) -> str:
"""Detect the type of optimization script (SAT, IMSO, etc.)"""
try:
content = script_path.read_text(encoding="utf-8", errors="ignore")
if "run_sat_optimization" in content or "SAT" in content or "Self-Aware Turbo" in content:
return "sat"
elif "IMSO" in content or "intelligent_optimizer" in content:
return "imso"
else:
return "generic"
except:
return "generic"
@router.post("/studies/{study_id}/start")
async def start_optimization(study_id: str, request: StartOptimizationRequest = None):
"""
Start the optimization process for a study
Args:
study_id: Study identifier
request: Optional start options
Returns:
JSON with process info
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Check if already running
existing_proc = _find_optimization_process(study_id)
if existing_proc:
return {
"success": False,
"message": f"Optimization already running (PID: {existing_proc.pid})",
"pid": existing_proc.pid,
}
# Find run_optimization.py or run_sat_optimization.py
run_script = study_dir / "run_sat_optimization.py"
if not run_script.exists():
run_script = study_dir / "run_optimization.py"
# Fallback to generic runner if no study script found but spec exists
is_generic_runner = False
if not run_script.exists() and (study_dir / "atomizer_spec.json").exists():
generic_runner = (
Path(__file__).parent.parent.parent.parent.parent
/ "optimization_engine"
/ "run_optimization.py"
)
if generic_runner.exists():
run_script = generic_runner
is_generic_runner = True
if not run_script.exists():
raise HTTPException(
status_code=404, detail=f"No optimization script found for study {study_id}"
)
# Detect script type and build appropriate command
script_type = (
_detect_script_type(run_script) if not is_generic_runner else "generic_universal"
)
python_exe = sys.executable
cmd = [python_exe, str(run_script)]
if is_generic_runner:
# Configure generic runner arguments
cmd.extend(["--config", str(study_dir / "atomizer_spec.json")])
# Auto-detect PRT and SIM files
model_dir = study_dir / "1_setup" / "model"
if not model_dir.exists():
model_dir = study_dir / "model"
prt_files = list(model_dir.glob("*.prt"))
sim_files = list(model_dir.glob("*.sim"))
if prt_files:
cmd.extend(["--prt", str(prt_files[0])])
if sim_files:
cmd.extend(["--sim", str(sim_files[0])])
if request and request.trials:
cmd.extend(["--trials", str(request.trials)])
elif request:
if script_type == "sat":
# SAT scripts use --trials
cmd.extend(["--trials", str(request.trials)])
if request.freshStart:
# SAT scripts might support --resume, so fresh = no --resume
pass # Default is fresh start for SAT
else:
# IMSO/generic scripts use different flags
cmd.append("--start")
if request.freshStart:
cmd.append("--fresh")
cmd.extend(["--fea-batch", str(request.feaBatchSize)])
cmd.extend(["--tune-trials", str(request.tuneTrials)])
cmd.extend(["--ensemble-size", str(request.ensembleSize)])
cmd.extend(["--patience", str(request.patience)])
# Start process in background
proc = subprocess.Popen(
cmd,
cwd=str(study_dir),
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
start_new_session=True,
)
_running_processes[study_id] = proc.pid
return {
"success": True,
"message": f"Optimization started successfully ({script_type} script)",
"pid": proc.pid,
"command": " ".join(cmd),
"script_type": script_type,
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to start optimization: {str(e)}")
class StopRequest(BaseModel):
force: bool = True # Default to force kill
@router.post("/studies/{study_id}/stop")
async def stop_optimization(study_id: str, request: StopRequest = None):
"""
Stop the optimization process for a study (hard kill by default)
Args:
study_id: Study identifier
request.force: If True (default), immediately kill. If False, try graceful first.
Returns:
JSON with result
"""
if request is None:
request = StopRequest()
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find running process
proc = _find_optimization_process(study_id)
if not proc:
return {"success": False, "message": "No running optimization process found"}
pid = proc.pid
killed_pids = []
try:
# FIRST: Get all children BEFORE killing parent
children = []
try:
children = proc.children(recursive=True)
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
if request.force:
# Hard kill: immediately kill parent and all children
# Kill children first (bottom-up)
for child in reversed(children):
try:
child.kill() # SIGKILL on Unix, TerminateProcess on Windows
killed_pids.append(child.pid)
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
# Then kill parent
try:
proc.kill()
killed_pids.append(pid)
except psutil.NoSuchProcess:
pass
else:
# Graceful: try SIGTERM first, then force
try:
proc.terminate()
proc.wait(timeout=5)
except psutil.TimeoutExpired:
# Didn't stop gracefully, force kill
for child in reversed(children):
try:
child.kill()
killed_pids.append(child.pid)
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
proc.kill()
killed_pids.append(pid)
except psutil.NoSuchProcess:
pass
# Clean up tracking
if study_id in _running_processes:
del _running_processes[study_id]
return {
"success": True,
"message": f"Optimization killed (PID: {pid}, +{len(children)} children)",
"pid": pid,
"killed_pids": killed_pids,
}
except psutil.NoSuchProcess:
if study_id in _running_processes:
del _running_processes[study_id]
return {"success": True, "message": "Process already terminated"}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to stop optimization: {str(e)}")
@router.post("/studies/{study_id}/pause")
async def pause_optimization(study_id: str):
"""
Pause the optimization process for a study.
Uses psutil.Process.suspend() which sends SIGSTOP on Unix or suspends on Windows.
Args:
study_id: Study identifier
Returns:
JSON with result
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find running process
proc = _find_optimization_process(study_id)
if not proc:
return {"success": False, "message": "No running optimization process found"}
# Check if already paused
if _paused_processes.get(study_id, False):
return {"success": False, "message": "Optimization is already paused"}
pid = proc.pid
try:
# Suspend the main process and all children
children = []
try:
children = proc.children(recursive=True)
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
# Suspend children first
for child in children:
try:
child.suspend()
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
# Suspend parent
proc.suspend()
# Mark as paused
_paused_processes[study_id] = True
return {
"success": True,
"message": f"Optimization paused (PID: {pid}, +{len(children)} children)",
"pid": pid,
}
except psutil.NoSuchProcess:
return {"success": False, "message": "Process no longer exists"}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to pause optimization: {str(e)}")
@router.post("/studies/{study_id}/resume")
async def resume_optimization(study_id: str):
"""
Resume a paused optimization process for a study.
Uses psutil.Process.resume() which sends SIGCONT on Unix or resumes on Windows.
Args:
study_id: Study identifier
Returns:
JSON with result
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find running process
proc = _find_optimization_process(study_id)
if not proc:
return {"success": False, "message": "No optimization process found"}
# Check if actually paused
if not _paused_processes.get(study_id, False):
return {"success": False, "message": "Optimization is not paused"}
pid = proc.pid
try:
# Resume the main process and all children
children = []
try:
children = proc.children(recursive=True)
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
# Resume parent first
proc.resume()
# Resume children
for child in children:
try:
child.resume()
except (psutil.NoSuchProcess, psutil.AccessDenied):
pass
# Mark as not paused
_paused_processes[study_id] = False
return {
"success": True,
"message": f"Optimization resumed (PID: {pid}, +{len(children)} children)",
"pid": pid,
}
except psutil.NoSuchProcess:
_paused_processes[study_id] = False
return {"success": False, "message": "Process no longer exists"}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to resume optimization: {str(e)}")
class ValidateRequest(BaseModel):
topN: int = 5
@router.post("/studies/{study_id}/validate")
async def validate_optimization(study_id: str, request: ValidateRequest = None):
"""
Run final FEA validation on top NN predictions
Args:
study_id: Study identifier
request: Validation options (topN)
Returns:
JSON with process info
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Check if optimization is still running
existing_proc = _find_optimization_process(study_id)
if existing_proc:
return {
"success": False,
"message": "Cannot validate while optimization is running. Stop optimization first.",
}
# Look for final_validation.py script
validation_script = study_dir / "final_validation.py"
if not validation_script.exists():
# Fall back to run_optimization.py with --validate flag if script doesn't exist
run_script = study_dir / "run_optimization.py"
if not run_script.exists():
raise HTTPException(status_code=404, detail="No validation script found")
python_exe = sys.executable
top_n = request.topN if request else 5
cmd = [python_exe, str(run_script), "--validate", "--top", str(top_n)]
else:
python_exe = sys.executable
top_n = request.topN if request else 5
cmd = [python_exe, str(validation_script), "--top", str(top_n)]
# Start validation process
proc = subprocess.Popen(
cmd,
cwd=str(study_dir),
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
start_new_session=True,
)
return {
"success": True,
"message": f"Validation started for top {top_n} NN predictions",
"pid": proc.pid,
"command": " ".join(cmd),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to start validation: {str(e)}")
# ============================================================================
# Optuna Dashboard Launch
# ============================================================================
_optuna_processes: Dict[str, subprocess.Popen] = {}
@router.post("/studies/{study_id}/optuna-dashboard")
async def launch_optuna_dashboard(study_id: str):
"""
Launch Optuna dashboard for a specific study
Args:
study_id: Study identifier
Returns:
JSON with dashboard URL and process info
"""
import time
import socket
def is_port_in_use(port: int) -> bool:
"""Check if a port is already in use"""
with socket.socket(socket.AF_INET, socket.SOCK_STREAM) as s:
return s.connect_ex(("localhost", port)) == 0
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
results_dir = get_results_dir(study_dir)
study_db = results_dir / "study.db"
if not study_db.exists():
raise HTTPException(
status_code=404, detail=f"No Optuna database found for study {study_id}"
)
port = 8081
# Check if dashboard is already running on this port
if is_port_in_use(port):
# Check if it's our process
if study_id in _optuna_processes:
proc = _optuna_processes[study_id]
if proc.poll() is None: # Still running
return {
"success": True,
"url": f"http://localhost:{port}",
"pid": proc.pid,
"message": "Optuna dashboard already running",
}
# Port in use but not by us - still return success since dashboard is available
return {
"success": True,
"url": f"http://localhost:{port}",
"pid": None,
"message": "Optuna dashboard already running on port 8081",
}
# Launch optuna-dashboard using CLI command (more robust than Python import)
# Use absolute path with POSIX format for SQLite URL
abs_db_path = study_db.absolute().as_posix()
storage_url = f"sqlite:///{abs_db_path}"
# Find optuna-dashboard executable - use full path for conda environment
import platform
import shutil as sh
optuna_dashboard_cmd = "optuna-dashboard"
if platform.system() == "Windows":
# Try to find optuna-dashboard in the conda environment
conda_paths = [
Path(r"C:\Users\antoi\anaconda3\envs\atomizer\Scripts\optuna-dashboard.exe"),
Path(r"C:\Users\antoi\anaconda3\envs\atomizer\Library\bin\optuna-dashboard.exe"),
]
for conda_path in conda_paths:
if conda_path.exists():
optuna_dashboard_cmd = str(conda_path)
break
else:
# Fallback: check if it's in PATH
found_path = sh.which("optuna-dashboard")
if found_path:
optuna_dashboard_cmd = found_path
else:
# Return helpful error message
raise HTTPException(
status_code=500,
detail="optuna-dashboard not found. Install with: pip install optuna-dashboard",
)
cmd = [optuna_dashboard_cmd, storage_url, "--port", str(port), "--host", "0.0.0.0"]
# On Windows, use CREATE_NEW_PROCESS_GROUP and DETACHED_PROCESS flags
if platform.system() == "Windows":
# Windows-specific: create detached process
DETACHED_PROCESS = 0x00000008
CREATE_NEW_PROCESS_GROUP = 0x00000200
proc = subprocess.Popen(
cmd,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
creationflags=DETACHED_PROCESS | CREATE_NEW_PROCESS_GROUP,
)
else:
proc = subprocess.Popen(
cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, start_new_session=True
)
_optuna_processes[study_id] = proc
# Wait for dashboard to start (check port repeatedly)
max_wait = 5 # seconds
start_time = time.time()
while time.time() - start_time < max_wait:
if is_port_in_use(port):
return {
"success": True,
"url": f"http://localhost:{port}",
"pid": proc.pid,
"message": "Optuna dashboard launched successfully",
}
# Check if process died
if proc.poll() is not None:
stderr = ""
try:
stderr = proc.stderr.read().decode() if proc.stderr else ""
except:
pass
return {"success": False, "message": f"Failed to start Optuna dashboard: {stderr}"}
time.sleep(0.5)
# Timeout - process might still be starting
if proc.poll() is None:
return {
"success": True,
"url": f"http://localhost:{port}",
"pid": proc.pid,
"message": "Optuna dashboard starting (may take a moment)",
}
else:
stderr = ""
try:
stderr = proc.stderr.read().decode() if proc.stderr else ""
except:
pass
return {"success": False, "message": f"Failed to start Optuna dashboard: {stderr}"}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to launch Optuna dashboard: {str(e)}")
@router.get("/optuna-dashboard/check")
async def check_optuna_dashboard_available():
"""
Check if optuna-dashboard is installed and available.
Returns:
JSON with availability status and installation instructions if not available.
"""
import platform
import shutil as sh
if platform.system() == "Windows":
# Check conda environment paths
conda_paths = [
Path(r"C:\Users\antoi\anaconda3\envs\atomizer\Scripts\optuna-dashboard.exe"),
Path(r"C:\Users\antoi\anaconda3\envs\atomizer\Library\bin\optuna-dashboard.exe"),
]
for conda_path in conda_paths:
if conda_path.exists():
return {
"available": True,
"path": str(conda_path),
"message": "optuna-dashboard is installed",
}
# Fallback: check system PATH
found_path = sh.which("optuna-dashboard")
if found_path:
return {"available": True, "path": found_path, "message": "optuna-dashboard is installed"}
return {
"available": False,
"path": None,
"message": "optuna-dashboard not found",
"install_instructions": "pip install optuna-dashboard",
}
# ============================================================================
# Model Files Endpoint
# ============================================================================
@router.get("/studies/{study_id}/model-files")
async def get_model_files(study_id: str):
"""
Get list of NX model files (.prt, .sim, .fem, .bdf, .dat, .op2) for a study
Args:
study_id: Study identifier
Returns:
JSON with list of model files and their paths
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Look for model directory (check multiple locations)
model_dirs = [
study_dir / "1_setup" / "model",
study_dir / "model",
study_dir / "1_setup",
study_dir,
]
model_files = []
model_dir_path = None
# NX and FEA file extensions to look for
nx_extensions = {".prt", ".sim", ".fem", ".bdf", ".dat", ".op2", ".f06", ".inp"}
for model_dir in model_dirs:
if model_dir.exists() and model_dir.is_dir():
for file_path in model_dir.iterdir():
if file_path.is_file() and file_path.suffix.lower() in nx_extensions:
model_files.append(
{
"name": file_path.name,
"path": str(file_path),
"extension": file_path.suffix.lower(),
"size_bytes": file_path.stat().st_size,
"size_display": _format_file_size(file_path.stat().st_size),
"modified": datetime.fromtimestamp(
file_path.stat().st_mtime
).isoformat(),
}
)
if model_dir_path is None:
model_dir_path = str(model_dir)
# Sort by extension for better display (prt first, then sim, fem, etc.)
extension_order = {
".prt": 0,
".sim": 1,
".fem": 2,
".bdf": 3,
".dat": 4,
".op2": 5,
".f06": 6,
".inp": 7,
}
model_files.sort(key=lambda x: (extension_order.get(x["extension"], 99), x["name"]))
return {
"study_id": study_id,
"model_dir": model_dir_path or str(study_dir / "1_setup" / "model"),
"files": model_files,
"count": len(model_files),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get model files: {str(e)}")
def _format_file_size(size_bytes: int) -> str:
"""Format file size in human-readable form"""
if size_bytes < 1024:
return f"{size_bytes} B"
elif size_bytes < 1024 * 1024:
return f"{size_bytes / 1024:.1f} KB"
elif size_bytes < 1024 * 1024 * 1024:
return f"{size_bytes / (1024 * 1024):.1f} MB"
else:
return f"{size_bytes / (1024 * 1024 * 1024):.2f} GB"
@router.post("/studies/{study_id}/open-folder")
async def open_model_folder(study_id: str, folder_type: str = "model"):
"""
Open the model folder in system file explorer
Args:
study_id: Study identifier
folder_type: Type of folder to open (model, results, setup)
Returns:
JSON with success status
"""
import os
import platform
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Determine which folder to open
if folder_type == "model":
target_dir = study_dir / "1_setup" / "model"
if not target_dir.exists():
target_dir = study_dir / "1_setup"
elif folder_type == "results":
target_dir = get_results_dir(study_dir)
elif folder_type == "setup":
target_dir = study_dir / "1_setup"
else:
target_dir = study_dir
if not target_dir.exists():
target_dir = study_dir
# Open in file explorer based on platform
system = platform.system()
try:
if system == "Windows":
os.startfile(str(target_dir))
elif system == "Darwin": # macOS
subprocess.Popen(["open", str(target_dir)])
else: # Linux
subprocess.Popen(["xdg-open", str(target_dir)])
return {"success": True, "message": f"Opened {target_dir}", "path": str(target_dir)}
except Exception as e:
return {
"success": False,
"message": f"Failed to open folder: {str(e)}",
"path": str(target_dir),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to open folder: {str(e)}")
@router.get("/studies/{study_id}/best-solution")
async def get_best_solution(study_id: str):
"""Get the best trial(s) for a study with improvement metrics"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study '{study_id}' not found")
results_dir = get_results_dir(study_dir)
db_path = results_dir / "study.db"
if not db_path.exists():
return {
"study_id": study_id,
"best_trial": None,
"first_trial": None,
"improvements": {},
"total_trials": 0,
}
conn = sqlite3.connect(str(db_path))
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
# Get best trial (single objective - minimize by default)
cursor.execute("""
SELECT t.trial_id, t.number, tv.value as objective,
datetime(tv.value_id, 'unixepoch') as timestamp
FROM trials t
JOIN trial_values tv ON t.trial_id = tv.trial_id
WHERE t.state = 'COMPLETE'
ORDER BY tv.value ASC
LIMIT 1
""")
best_row = cursor.fetchone()
# Get first completed trial for comparison
cursor.execute("""
SELECT t.trial_id, t.number, tv.value as objective
FROM trials t
JOIN trial_values tv ON t.trial_id = tv.trial_id
WHERE t.state = 'COMPLETE'
ORDER BY t.number ASC
LIMIT 1
""")
first_row = cursor.fetchone()
# Get total trial count
cursor.execute("SELECT COUNT(*) FROM trials WHERE state = 'COMPLETE'")
total_trials = cursor.fetchone()[0]
best_trial = None
first_trial = None
improvements = {}
if best_row:
best_trial_id = best_row["trial_id"]
# Get design variables
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(best_trial_id,),
)
params = {row["param_name"]: row["param_value"] for row in cursor.fetchall()}
# Get user attributes (including results)
cursor.execute(
"""
SELECT key, value_json
FROM trial_user_attributes
WHERE trial_id = ?
""",
(best_trial_id,),
)
user_attrs = {}
for row in cursor.fetchall():
try:
user_attrs[row["key"]] = json.loads(row["value_json"])
except:
user_attrs[row["key"]] = row["value_json"]
best_trial = {
"trial_number": best_row["number"],
"objective": best_row["objective"],
"design_variables": params,
"user_attrs": user_attrs,
"timestamp": best_row["timestamp"],
}
if first_row:
first_trial_id = first_row["trial_id"]
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(first_trial_id,),
)
first_params = {row["param_name"]: row["param_value"] for row in cursor.fetchall()}
first_trial = {
"trial_number": first_row["number"],
"objective": first_row["objective"],
"design_variables": first_params,
}
# Calculate improvement
if best_row and first_row["objective"] != 0:
improvement_pct = (
(first_row["objective"] - best_row["objective"]) / abs(first_row["objective"])
) * 100
improvements["objective"] = {
"initial": first_row["objective"],
"final": best_row["objective"],
"improvement_pct": round(improvement_pct, 2),
"absolute_change": round(first_row["objective"] - best_row["objective"], 6),
}
conn.close()
return {
"study_id": study_id,
"best_trial": best_trial,
"first_trial": first_trial,
"improvements": improvements,
"total_trials": total_trials,
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get best solution: {str(e)}")
@router.get("/studies/{study_id}/runs")
async def get_study_runs(study_id: str):
"""
Get all optimization runs/studies in the database for comparison.
Many studies have multiple Optuna studies (e.g., v11_fea, v11_iter1_nn, v11_iter2_nn).
This endpoint returns metrics for each sub-study.
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study '{study_id}' not found")
results_dir = get_results_dir(study_dir)
db_path = results_dir / "study.db"
if not db_path.exists():
return {"runs": [], "total_runs": 0}
conn = sqlite3.connect(str(db_path))
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
# Get all Optuna studies in this database
cursor.execute("""
SELECT study_id, study_name
FROM studies
ORDER BY study_id
""")
studies = cursor.fetchall()
runs = []
for study_row in studies:
optuna_study_id = study_row["study_id"]
study_name = study_row["study_name"]
# Get trial count
cursor.execute(
"""
SELECT COUNT(*) FROM trials
WHERE study_id = ? AND state = 'COMPLETE'
""",
(optuna_study_id,),
)
trial_count = cursor.fetchone()[0]
if trial_count == 0:
continue
# Get best value (first objective)
cursor.execute(
"""
SELECT MIN(tv.value) as best_value
FROM trial_values tv
JOIN trials t ON tv.trial_id = t.trial_id
WHERE t.study_id = ? AND t.state = 'COMPLETE' AND tv.objective = 0
""",
(optuna_study_id,),
)
best_result = cursor.fetchone()
best_value = best_result["best_value"] if best_result else None
# Get average value
cursor.execute(
"""
SELECT AVG(tv.value) as avg_value
FROM trial_values tv
JOIN trials t ON tv.trial_id = t.trial_id
WHERE t.study_id = ? AND t.state = 'COMPLETE' AND tv.objective = 0
""",
(optuna_study_id,),
)
avg_result = cursor.fetchone()
avg_value = avg_result["avg_value"] if avg_result else None
# Get time range
cursor.execute(
"""
SELECT MIN(datetime_start) as first_trial, MAX(datetime_complete) as last_trial
FROM trials
WHERE study_id = ? AND state = 'COMPLETE'
""",
(optuna_study_id,),
)
time_result = cursor.fetchone()
# Determine source type (FEA or NN)
source = "NN" if "_nn" in study_name.lower() else "FEA"
runs.append(
{
"run_id": optuna_study_id,
"name": study_name,
"source": source,
"trial_count": trial_count,
"best_value": best_value,
"avg_value": avg_value,
"first_trial": time_result["first_trial"] if time_result else None,
"last_trial": time_result["last_trial"] if time_result else None,
}
)
conn.close()
return {"runs": runs, "total_runs": len(runs), "study_id": study_id}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get runs: {str(e)}")
class UpdateConfigRequest(BaseModel):
config: Optional[dict] = None
intent: Optional[dict] = None
def intent_to_config(intent: dict, existing_config: Optional[dict] = None) -> dict:
"""
Convert canvas intent format to optimization_config.json format.
Preserves existing config fields that aren't in the intent.
"""
# Start with existing config or empty
config = existing_config.copy() if existing_config else {}
# Metadata
if intent.get("model", {}).get("path"):
model_path = Path(intent["model"]["path"]).name
if "simulation" not in config:
config["simulation"] = {}
config["simulation"]["model_file"] = model_path
# Try to infer other files from model name
base_name = model_path.replace(".prt", "")
if not config["simulation"].get("fem_file"):
config["simulation"]["fem_file"] = f"{base_name}_fem1.fem"
if not config["simulation"].get("sim_file"):
config["simulation"]["sim_file"] = f"{base_name}_sim1.sim"
# Solver
if intent.get("solver", {}).get("type"):
solver_type = intent["solver"]["type"]
if "simulation" not in config:
config["simulation"] = {}
config["simulation"]["solver"] = "nastran"
# Map SOL types to analysis_types
sol_to_analysis = {
"SOL101": ["static"],
"SOL103": ["modal"],
"SOL105": ["buckling"],
"SOL106": ["nonlinear"],
"SOL111": ["modal", "frequency_response"],
"SOL112": ["modal", "transient"],
}
config["simulation"]["analysis_types"] = sol_to_analysis.get(solver_type, ["static"])
# Design Variables
if intent.get("design_variables"):
config["design_variables"] = []
for dv in intent["design_variables"]:
config["design_variables"].append(
{
"parameter": dv.get("name", dv.get("expression_name", "")),
"bounds": [dv.get("min", 0), dv.get("max", 100)],
"description": dv.get("description", f"Design variable: {dv.get('name', '')}"),
}
)
# Extractors → used for objectives/constraints extraction
extractor_map = {}
if intent.get("extractors"):
for ext in intent["extractors"]:
ext_id = ext.get("id", "")
ext_name = ext.get("name", "")
extractor_map[ext_name] = ext
# Objectives
if intent.get("objectives"):
config["objectives"] = []
for obj in intent["objectives"]:
obj_config = {
"name": obj.get("name", "objective"),
"goal": obj.get("direction", "minimize"),
"weight": obj.get("weight", 1.0),
"description": obj.get("description", f"Objective: {obj.get('name', '')}"),
}
# Add extraction config if extractor referenced
extractor_name = obj.get("extractor")
if extractor_name and extractor_name in extractor_map:
ext = extractor_map[extractor_name]
ext_config = ext.get("config", {})
obj_config["extraction"] = {
"action": _extractor_id_to_action(ext.get("id", "")),
"domain": "result_extraction",
"params": ext_config,
}
config["objectives"].append(obj_config)
# Constraints
if intent.get("constraints"):
config["constraints"] = []
for con in intent["constraints"]:
op = con.get("operator", "<=")
con_type = "less_than" if "<" in op else "greater_than" if ">" in op else "equal_to"
con_config = {
"name": con.get("name", "constraint"),
"type": con_type,
"threshold": con.get("value", 0),
"description": con.get("description", f"Constraint: {con.get('name', '')}"),
}
# Add extraction config if extractor referenced
extractor_name = con.get("extractor")
if extractor_name and extractor_name in extractor_map:
ext = extractor_map[extractor_name]
ext_config = ext.get("config", {})
con_config["extraction"] = {
"action": _extractor_id_to_action(ext.get("id", "")),
"domain": "result_extraction",
"params": ext_config,
}
config["constraints"].append(con_config)
# Optimization settings
if intent.get("optimization"):
opt = intent["optimization"]
if "optimization_settings" not in config:
config["optimization_settings"] = {}
if opt.get("max_trials"):
config["optimization_settings"]["n_trials"] = opt["max_trials"]
if opt.get("method"):
# Map method names to Optuna sampler names
method_map = {
"TPE": "TPESampler",
"CMA-ES": "CmaEsSampler",
"NSGA-II": "NSGAIISampler",
"RandomSearch": "RandomSampler",
"GP-BO": "GPSampler",
}
config["optimization_settings"]["sampler"] = method_map.get(
opt["method"], opt["method"]
)
# Surrogate
if intent.get("surrogate", {}).get("enabled"):
config["surrogate"] = {
"type": intent["surrogate"].get("type", "MLP"),
"min_trials": intent["surrogate"].get("min_trials", 20),
}
return config
def _extractor_id_to_action(ext_id: str) -> str:
"""Map extractor IDs (E1, E2, etc.) to extraction action names."""
action_map = {
"E1": "extract_displacement",
"E2": "extract_frequency",
"E3": "extract_stress",
"E4": "extract_mass",
"E5": "extract_mass",
"E8": "extract_zernike",
"E9": "extract_zernike",
"E10": "extract_zernike",
"displacement": "extract_displacement",
"frequency": "extract_frequency",
"stress": "extract_stress",
"mass": "extract_mass",
"mass_bdf": "extract_mass",
"mass_cad": "extract_mass",
"zernike": "extract_zernike",
"zernike_opd": "extract_zernike",
}
return action_map.get(ext_id, "extract_displacement")
@router.put("/studies/{study_id}/config")
async def update_study_config(study_id: str, request: UpdateConfigRequest):
"""
Update the optimization_config.json for a study
Accepts either:
- {"config": {...}} - Direct config object (overwrites)
- {"intent": {...}} - Canvas intent (converted and merged with existing)
Args:
study_id: Study identifier
request: New configuration data (config or intent)
Returns:
JSON with success status
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Check if optimization is running - don't allow config changes while running
if is_optimization_running(study_id):
raise HTTPException(
status_code=409,
detail="Cannot modify config while optimization is running. Stop the optimization first.",
)
# Find config file location
config_file = study_dir / "1_setup" / "optimization_config.json"
if not config_file.exists():
config_file = study_dir / "optimization_config.json"
if not config_file.exists():
raise HTTPException(
status_code=404, detail=f"Config file not found for study {study_id}"
)
# Backup existing config
backup_file = config_file.with_suffix(".json.backup")
shutil.copy(config_file, backup_file)
# Determine which format was provided
if request.config is not None:
# Direct config update
new_config = request.config
elif request.intent is not None:
# Convert intent to config, merging with existing
with open(config_file, "r") as f:
existing_config = json.load(f)
new_config = intent_to_config(request.intent, existing_config)
else:
raise HTTPException(
status_code=400, detail="Request must include either 'config' or 'intent' field"
)
# Write new config
with open(config_file, "w") as f:
json.dump(new_config, f, indent=2)
return {
"success": True,
"message": "Configuration updated successfully",
"path": str(config_file),
"backup_path": str(backup_file),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to update config: {str(e)}")
# ============================================================================
# Zernike Analysis Endpoints
# ============================================================================
@router.get("/studies/{study_id}/zernike-available")
async def get_zernike_available_trials(study_id: str):
"""
Get list of trial numbers that have Zernike analysis available (OP2 files).
Returns:
JSON with list of trial numbers that have iteration folders with OP2 files
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study '{study_id}' not found")
iter_base = study_dir / "2_iterations"
if not iter_base.exists():
return {"study_id": study_id, "available_trials": [], "count": 0}
available_trials = []
for d in iter_base.iterdir():
if d.is_dir() and d.name.startswith("iter"):
# Check for OP2 file
op2_files = list(d.glob("*.op2"))
if op2_files:
iter_num_str = d.name.replace("iter", "")
try:
iter_num = int(iter_num_str)
# Map iter number to trial number (iter1 -> trial 0, etc.)
# But also keep iter_num as possibility
if iter_num != 9999:
available_trials.append(iter_num - 1) # 0-indexed trial
else:
available_trials.append(9999) # Special test iteration
except ValueError:
pass
available_trials.sort()
return {
"study_id": study_id,
"available_trials": available_trials,
"count": len(available_trials),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get available trials: {str(e)}")
@router.get("/studies/{study_id}/trials/{trial_number}/zernike")
async def get_trial_zernike(study_id: str, trial_number: int):
"""
Generate or retrieve Zernike analysis HTML for a specific trial.
This endpoint generates interactive Zernike wavefront analysis for mirror
optimization trials. It produces 3D surface residual plots, RMS metrics,
and coefficient bar charts for each angle comparison (40_vs_20, 60_vs_20, 90_vs_20).
Args:
study_id: Study identifier
trial_number: Trial/iteration number
Returns:
JSON with HTML content for each comparison, or error if OP2 not found
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study '{study_id}' not found")
# Find iteration directory
# Trial numbers in Optuna DB may differ from iteration folder numbers
# Common patterns:
# 1. iter{trial_number} - direct mapping
# 2. iter{trial_number + 1} - 0-indexed trials vs 1-indexed folders
# 3. Check for actual folder existence
iter_dir = None
possible_iter_nums = [trial_number, trial_number + 1]
for iter_num in possible_iter_nums:
candidate = study_dir / "2_iterations" / f"iter{iter_num}"
if candidate.exists():
iter_dir = candidate
break
if iter_dir is None:
raise HTTPException(
status_code=404,
detail=f"No FEA results for trial {trial_number}. This trial may have used surrogate model (NN) prediction instead of full FEA simulation. Zernike analysis requires OP2 results from actual FEA runs.",
)
# Check for OP2 file BEFORE doing expensive imports
op2_files = list(iter_dir.glob("*.op2"))
if not op2_files:
raise HTTPException(
status_code=404,
detail=f"No OP2 results file found in {iter_dir.name}. FEA may not have completed.",
)
# Only import heavy dependencies after we know we have an OP2 file
sys.path.append(str(Path(__file__).parent.parent.parent.parent.parent))
from optimization_engine.extractors.extract_zernike_figure import ZernikeOPDExtractor
from optimization_engine.extractors import ZernikeExtractor
import numpy as np
from math import factorial
import plotly.graph_objects as go
from plotly.subplots import make_subplots
from matplotlib.tri import Triangulation
# Also find BDF/DAT geometry file for OPD extractor
bdf_files = list(iter_dir.glob("*.dat")) + list(iter_dir.glob("*.bdf"))
bdf_path = bdf_files[0] if bdf_files else None
# Configuration
N_MODES = 50
AMP = 0.5 # Reduced deformation scaling (0.5x)
PANCAKE = 3.0 # Z-axis range multiplier
PLOT_DOWNSAMPLE = 5000 # Reduced for faster loading
FILTER_LOW_ORDERS = 4
COLORSCALE = "Turbo" # Colorscale: 'RdBu_r', 'Viridis', 'Plasma', 'Turbo'
SUBCASE_MAP = {
"1": "90",
"2": "20",
"3": "40",
"4": "60",
}
REF_SUBCASE = "2"
def noll_indices(j: int):
if j < 1:
raise ValueError("Noll index j must be >= 1")
count = 0
n = 0
while True:
if n == 0:
ms = [0]
elif n % 2 == 0:
ms = [0] + [m for k in range(1, n // 2 + 1) for m in (-2 * k, 2 * k)]
else:
ms = [m for k in range(0, (n + 1) // 2) for m in (-(2 * k + 1), (2 * k + 1))]
for m in ms:
count += 1
if count == j:
return n, m
n += 1
def zernike_noll(j: int, r: np.ndarray, th: np.ndarray) -> np.ndarray:
n, m = noll_indices(j)
R = np.zeros_like(r)
for s in range((n - abs(m)) // 2 + 1):
c = (
(-1) ** s
* factorial(n - s)
/ (
factorial(s)
* factorial((n + abs(m)) // 2 - s)
* factorial((n - abs(m)) // 2 - s)
)
)
R += c * r ** (n - 2 * s)
if m == 0:
return R
return R * (np.cos(m * th) if m > 0 else np.sin(-m * th))
def zernike_common_name(n: int, m: int) -> str:
names = {
(0, 0): "Piston",
(1, -1): "Tilt X",
(1, 1): "Tilt Y",
(2, 0): "Defocus",
(2, -2): "Astig 45°",
(2, 2): "Astig 0°",
(3, -1): "Coma X",
(3, 1): "Coma Y",
(3, -3): "Trefoil X",
(3, 3): "Trefoil Y",
(4, 0): "Primary Spherical",
(4, -2): "Sec Astig X",
(4, 2): "Sec Astig Y",
(4, -4): "Quadrafoil X",
(4, 4): "Quadrafoil Y",
(5, -1): "Sec Coma X",
(5, 1): "Sec Coma Y",
(5, -3): "Sec Trefoil X",
(5, 3): "Sec Trefoil Y",
(5, -5): "Pentafoil X",
(5, 5): "Pentafoil Y",
(6, 0): "Sec Spherical",
}
return names.get((n, m), f"Z(n={n}, m={m})")
def zernike_label(j: int) -> str:
n, m = noll_indices(j)
return f"J{j:02d} - {zernike_common_name(n, m)}"
def compute_manufacturing_metrics(coefficients: np.ndarray) -> dict:
"""Compute manufacturing-related aberration metrics."""
return {
"defocus_nm": float(abs(coefficients[3])), # J4
"astigmatism_rms": float(
np.sqrt(coefficients[4] ** 2 + coefficients[5] ** 2)
), # J5+J6
"coma_rms": float(np.sqrt(coefficients[6] ** 2 + coefficients[7] ** 2)), # J7+J8
"trefoil_rms": float(
np.sqrt(coefficients[8] ** 2 + coefficients[9] ** 2)
), # J9+J10
"spherical_nm": float(abs(coefficients[10]))
if len(coefficients) > 10
else 0.0, # J11
}
def compute_rms_filter_j1to3(X, Y, W_nm, coefficients, R):
"""Compute RMS with J1-J3 filtered (keeping defocus for optician workload)."""
Xc = X - np.mean(X)
Yc = Y - np.mean(Y)
r = np.hypot(Xc / R, Yc / R)
th = np.arctan2(Yc, Xc)
Z_j1to3 = np.column_stack([zernike_noll(j, r, th) for j in range(1, 4)])
W_filter_j1to3 = W_nm - Z_j1to3 @ coefficients[:3]
return float(np.sqrt(np.mean(W_filter_j1to3**2)))
def generate_zernike_html(
title: str,
X: np.ndarray,
Y: np.ndarray,
W_nm: np.ndarray,
coefficients: np.ndarray,
rms_global: float,
rms_filtered: float,
ref_title: str = "20 deg",
abs_pair=None,
is_manufacturing: bool = False,
mfg_metrics: dict = None,
correction_metrics: dict = None,
) -> str:
"""Generate HTML string for Zernike visualization with full tables."""
# Compute residual surface (filtered)
Xc = X - np.mean(X)
Yc = Y - np.mean(Y)
R = float(np.max(np.hypot(Xc, Yc)))
r = np.hypot(Xc / R, Yc / R)
th = np.arctan2(Yc, Xc)
Z = np.column_stack([zernike_noll(j, r, th) for j in range(1, N_MODES + 1)])
W_res_filt = W_nm - Z[:, :FILTER_LOW_ORDERS].dot(coefficients[:FILTER_LOW_ORDERS])
# Compute J1-J3 filtered RMS (optician workload metric)
rms_filter_j1to3 = compute_rms_filter_j1to3(X, Y, W_nm, coefficients, R)
# Downsample for display
n = len(X)
if n > PLOT_DOWNSAMPLE:
rng = np.random.default_rng(42)
sel = rng.choice(n, size=PLOT_DOWNSAMPLE, replace=False)
Xp, Yp, Wp = X[sel], Y[sel], W_res_filt[sel]
else:
Xp, Yp, Wp = X, Y, W_res_filt
res_amp = AMP * Wp
max_amp = float(np.max(np.abs(res_amp))) if res_amp.size else 1.0
# Create smooth shaded SURFACE mesh with lighting
surface_trace = None
try:
tri = Triangulation(Xp, Yp)
if tri.triangles is not None and len(tri.triangles) > 0:
i_idx, j_idx, k_idx = tri.triangles.T
surface_trace = go.Mesh3d(
x=Xp.tolist(),
y=Yp.tolist(),
z=res_amp.tolist(),
i=i_idx.tolist(),
j=j_idx.tolist(),
k=k_idx.tolist(),
intensity=res_amp.tolist(),
colorscale=COLORSCALE,
opacity=1.0,
flatshading=False, # Smooth shading
lighting=dict(
ambient=0.4, diffuse=0.8, specular=0.3, roughness=0.5, fresnel=0.2
),
lightposition=dict(x=100, y=200, z=300),
showscale=True,
colorbar=dict(
title=dict(text="Residual (nm)", side="right"),
thickness=15,
len=0.6,
tickformat=".1f",
),
hovertemplate="X: %{x:.1f}<br>Y: %{y:.1f}<br>Residual: %{z:.2f} nm<extra></extra>",
)
except Exception as e:
print(f"Triangulation failed: {e}")
labels = [zernike_label(j) for j in range(1, N_MODES + 1)]
coeff_abs = np.abs(coefficients)
mfg = compute_manufacturing_metrics(coefficients)
# Determine layout based on whether this is manufacturing (90 deg) view
if is_manufacturing and mfg_metrics and correction_metrics:
# Manufacturing view: 5 rows
fig = make_subplots(
rows=5,
cols=1,
specs=[
[{"type": "scene"}],
[{"type": "table"}],
[{"type": "table"}],
[{"type": "table"}],
[{"type": "xy"}],
],
row_heights=[0.35, 0.10, 0.15, 0.15, 0.25],
vertical_spacing=0.025,
subplot_titles=[
f"<b>Surface Residual (relative to {ref_title})</b>",
"<b>RMS Metrics</b>",
"<b>Mode Magnitudes (Absolute 90 deg)</b>",
"<b>Pre-Correction (90 deg - 20 deg)</b>",
f"<b>Zernike Coefficients ({N_MODES} modes)</b>",
],
)
else:
# Standard relative view: 4 rows with full coefficient table
fig = make_subplots(
rows=4,
cols=1,
specs=[
[{"type": "scene"}],
[{"type": "table"}],
[{"type": "table"}],
[{"type": "xy"}],
],
row_heights=[0.40, 0.12, 0.28, 0.20],
vertical_spacing=0.03,
subplot_titles=[
f"<b>Surface Residual (relative to {ref_title})</b>",
"<b>RMS Metrics</b>",
f"<b>Zernike Coefficients ({N_MODES} modes)</b>",
"<b>Top 20 |Zernike Coefficients| (nm)</b>",
],
)
# Add surface mesh (or fallback to scatter)
if surface_trace is not None:
fig.add_trace(surface_trace, row=1, col=1)
else:
# Fallback to scatter if triangulation failed
fig.add_trace(
go.Scatter3d(
x=Xp.tolist(),
y=Yp.tolist(),
z=res_amp.tolist(),
mode="markers",
marker=dict(
size=2, color=res_amp.tolist(), colorscale=COLORSCALE, showscale=True
),
showlegend=False,
),
row=1,
col=1,
)
fig.update_scenes(
camera=dict(eye=dict(x=1.2, y=1.2, z=0.8), up=dict(x=0, y=0, z=1)),
xaxis=dict(
title="X (mm)",
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(240,240,240,0.9)",
),
yaxis=dict(
title="Y (mm)",
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(240,240,240,0.9)",
),
zaxis=dict(
title="Residual (nm)",
range=[-max_amp * PANCAKE, max_amp * PANCAKE],
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(230,230,250,0.9)",
),
aspectmode="manual",
aspectratio=dict(x=1, y=1, z=0.4),
)
# Row 2: RMS table with all metrics
if abs_pair is not None:
abs_global, abs_filtered = abs_pair
fig.add_trace(
go.Table(
header=dict(
values=[
"<b>Metric</b>",
"<b>Relative (nm)</b>",
"<b>Absolute (nm)</b>",
],
align="left",
fill_color="rgb(55, 83, 109)",
font=dict(color="white", size=12),
),
cells=dict(
values=[
[
"Global RMS",
"Filtered RMS (J1-J4)",
"Filtered RMS (J1-J3, w/ defocus)",
],
[
f"{rms_global:.2f}",
f"{rms_filtered:.2f}",
f"{rms_filter_j1to3:.2f}",
],
[f"{abs_global:.2f}", f"{abs_filtered:.2f}", "-"],
],
align="left",
fill_color="rgb(243, 243, 243)",
),
),
row=2,
col=1,
)
else:
fig.add_trace(
go.Table(
header=dict(
values=["<b>Metric</b>", "<b>Value (nm)</b>"],
align="left",
fill_color="rgb(55, 83, 109)",
font=dict(color="white", size=12),
),
cells=dict(
values=[
[
"Global RMS",
"Filtered RMS (J1-J4)",
"Filtered RMS (J1-J3, w/ defocus)",
],
[
f"{rms_global:.2f}",
f"{rms_filtered:.2f}",
f"{rms_filter_j1to3:.2f}",
],
],
align="left",
fill_color="rgb(243, 243, 243)",
),
),
row=2,
col=1,
)
if is_manufacturing and mfg_metrics and correction_metrics:
# Row 3: Mode magnitudes at 90 deg (absolute)
fig.add_trace(
go.Table(
header=dict(
values=["<b>Mode</b>", "<b>Value (nm)</b>"],
align="left",
fill_color="rgb(55, 83, 109)",
font=dict(color="white", size=11),
),
cells=dict(
values=[
[
"Defocus (J4)",
"Astigmatism (J5+J6)",
"Coma (J7+J8)",
"Trefoil (J9+J10)",
"Spherical (J11)",
],
[
f"{mfg_metrics['defocus_nm']:.2f}",
f"{mfg_metrics['astigmatism_rms']:.2f}",
f"{mfg_metrics['coma_rms']:.2f}",
f"{mfg_metrics['trefoil_rms']:.2f}",
f"{mfg_metrics['spherical_nm']:.2f}",
],
],
align="left",
fill_color="rgb(243, 243, 243)",
),
),
row=3,
col=1,
)
# Row 4: Pre-correction (90 deg - 20 deg)
fig.add_trace(
go.Table(
header=dict(
values=["<b>Correction Mode</b>", "<b>Value (nm)</b>"],
align="left",
fill_color="rgb(55, 83, 109)",
font=dict(color="white", size=11),
),
cells=dict(
values=[
[
"Total RMS (J1-J3 filter)",
"Defocus (J4)",
"Astigmatism (J5+J6)",
"Coma (J7+J8)",
],
[
f"{correction_metrics.get('rms_filter_j1to3', 0):.2f}",
f"{correction_metrics['defocus_nm']:.2f}",
f"{correction_metrics['astigmatism_rms']:.2f}",
f"{correction_metrics['coma_rms']:.2f}",
],
],
align="left",
fill_color="rgb(243, 243, 243)",
),
),
row=4,
col=1,
)
# Row 5: Bar chart
sorted_idx = np.argsort(coeff_abs)[::-1][:20]
fig.add_trace(
go.Bar(
x=[float(coeff_abs[i]) for i in sorted_idx],
y=[labels[i] for i in sorted_idx],
orientation="h",
marker_color="rgb(55, 83, 109)",
hovertemplate="%{y}<br>|Coeff| = %{x:.3f} nm<extra></extra>",
showlegend=False,
),
row=5,
col=1,
)
else:
# Row 3: Full coefficient table
fig.add_trace(
go.Table(
header=dict(
values=[
"<b>Noll j</b>",
"<b>Mode Name</b>",
"<b>Coeff (nm)</b>",
"<b>|Coeff| (nm)</b>",
],
align="left",
fill_color="rgb(55, 83, 109)",
font=dict(color="white", size=11),
),
cells=dict(
values=[
list(range(1, N_MODES + 1)),
labels,
[f"{c:+.3f}" for c in coefficients],
[f"{abs(c):.3f}" for c in coefficients],
],
align="left",
fill_color="rgb(243, 243, 243)",
font=dict(size=10),
height=22,
),
),
row=3,
col=1,
)
# Row 4: Bar chart - top 20 modes by magnitude
sorted_idx = np.argsort(coeff_abs)[::-1][:20]
fig.add_trace(
go.Bar(
x=[float(coeff_abs[i]) for i in sorted_idx],
y=[labels[i] for i in sorted_idx],
orientation="h",
marker_color="rgb(55, 83, 109)",
hovertemplate="%{y}<br>|Coeff| = %{x:.3f} nm<extra></extra>",
showlegend=False,
),
row=4,
col=1,
)
fig.update_layout(
width=1400,
height=1800 if is_manufacturing else 1600,
margin=dict(t=80, b=20, l=20, r=20),
title=dict(text=f"<b>{title}</b>", font=dict(size=20), x=0.5),
paper_bgcolor="white",
plot_bgcolor="white",
)
return fig.to_html(include_plotlyjs="cdn", full_html=True)
# =====================================================================
# NEW: Use OPD method (accounts for lateral X,Y displacement)
# =====================================================================
op2_path = op2_files[0]
# Try OPD extractor first (more accurate), fall back to Standard if no BDF
use_opd = bdf_path is not None
if use_opd:
try:
opd_extractor = ZernikeOPDExtractor(
str(op2_path),
bdf_path=str(bdf_path),
n_modes=N_MODES,
filter_orders=FILTER_LOW_ORDERS,
)
except Exception as e:
print(f"OPD extractor failed, falling back to Standard: {e}")
use_opd = False
# Also create Standard extractor for comparison
std_extractor = ZernikeExtractor(str(op2_path), displacement_unit="mm", n_modes=N_MODES)
def generate_dual_method_html(
title: str, target_sc: str, ref_sc: str, is_manufacturing: bool = False
) -> tuple:
"""Generate HTML with OPD method and displacement component views.
Returns: (html_content, rms_global_opd, rms_filtered_opd, lateral_stats)
"""
target_angle = SUBCASE_MAP.get(target_sc, target_sc)
ref_angle = SUBCASE_MAP.get(ref_sc, ref_sc)
# Extract using OPD method (primary)
if use_opd:
opd_rel = opd_extractor.extract_relative(target_sc, ref_sc)
opd_abs = opd_extractor.extract_subcase(target_sc)
else:
opd_rel = None
opd_abs = None
# Extract using Standard method (for comparison)
std_rel = std_extractor.extract_relative(target_sc, ref_sc, include_coefficients=True)
std_abs = std_extractor.extract_subcase(target_sc, include_coefficients=True)
# Get OPD data with full arrays for visualization
if use_opd:
opd_data = opd_extractor._build_figure_opd_data(target_sc)
opd_ref_data = opd_extractor._build_figure_opd_data(ref_sc)
# Build relative displacement arrays (node-by-node)
ref_map = {int(nid): i for i, nid in enumerate(opd_ref_data["node_ids"])}
X_list, Y_list, WFE_list = [], [], []
dx_list, dy_list, dz_list = [], [], []
for i, nid in enumerate(opd_data["node_ids"]):
nid = int(nid)
if nid not in ref_map:
continue
ref_idx = ref_map[nid]
# Use deformed coordinates from OPD
X_list.append(opd_data["x_deformed"][i])
Y_list.append(opd_data["y_deformed"][i])
WFE_list.append(opd_data["wfe_nm"][i] - opd_ref_data["wfe_nm"][ref_idx])
# Relative displacements (target - reference)
dx_list.append(opd_data["dx"][i] - opd_ref_data["dx"][ref_idx])
dy_list.append(opd_data["dy"][i] - opd_ref_data["dy"][ref_idx])
dz_list.append(opd_data["dz"][i] - opd_ref_data["dz"][ref_idx])
X = np.array(X_list)
Y = np.array(Y_list)
W = np.array(WFE_list)
dx = np.array(dx_list) * 1000.0 # mm to µm
dy = np.array(dy_list) * 1000.0
dz = np.array(dz_list) * 1000.0
# Lateral displacement magnitude
lateral_um = np.sqrt(dx**2 + dy**2)
max_lateral = float(np.max(np.abs(lateral_um)))
rms_lateral = float(np.sqrt(np.mean(lateral_um**2)))
rms_global_opd = opd_rel["relative_global_rms_nm"]
rms_filtered_opd = opd_rel["relative_filtered_rms_nm"]
coefficients = np.array(opd_rel.get("delta_coefficients", std_rel["coefficients"]))
else:
# Fallback to Standard method arrays
target_disp = std_extractor.displacements[target_sc]
ref_disp = std_extractor.displacements[ref_sc]
ref_map = {int(nid): i for i, nid in enumerate(ref_disp["node_ids"])}
X_list, Y_list, W_list = [], [], []
dx_list, dy_list, dz_list = [], [], []
for i, nid in enumerate(target_disp["node_ids"]):
nid = int(nid)
if nid not in ref_map:
continue
geo = std_extractor.node_geometry.get(nid)
if geo is None:
continue
ref_idx = ref_map[nid]
X_list.append(geo[0])
Y_list.append(geo[1])
target_wfe = target_disp["disp"][i, 2] * std_extractor.wfe_factor
ref_wfe = ref_disp["disp"][ref_idx, 2] * std_extractor.wfe_factor
W_list.append(target_wfe - ref_wfe)
# Relative displacements (mm to µm)
dx_list.append(
(target_disp["disp"][i, 0] - ref_disp["disp"][ref_idx, 0]) * 1000.0
)
dy_list.append(
(target_disp["disp"][i, 1] - ref_disp["disp"][ref_idx, 1]) * 1000.0
)
dz_list.append(
(target_disp["disp"][i, 2] - ref_disp["disp"][ref_idx, 2]) * 1000.0
)
X = np.array(X_list)
Y = np.array(Y_list)
W = np.array(W_list)
dx = np.array(dx_list)
dy = np.array(dy_list)
dz = np.array(dz_list)
lateral_um = np.sqrt(dx**2 + dy**2)
max_lateral = float(np.max(np.abs(lateral_um)))
rms_lateral = float(np.sqrt(np.mean(lateral_um**2)))
rms_global_opd = std_rel["relative_global_rms_nm"]
rms_filtered_opd = std_rel["relative_filtered_rms_nm"]
coefficients = np.array(std_rel["coefficients"])
# Standard method RMS values
rms_global_std = std_rel["relative_global_rms_nm"]
rms_filtered_std = std_rel["relative_filtered_rms_nm"]
# Compute residual surface
Xc = X - np.mean(X)
Yc = Y - np.mean(Y)
R = float(np.max(np.hypot(Xc, Yc)))
r = np.hypot(Xc / R, Yc / R)
th = np.arctan2(Yc, Xc)
Z_basis = np.column_stack([zernike_noll(j, r, th) for j in range(1, N_MODES + 1)])
W_res_filt = W - Z_basis[:, :FILTER_LOW_ORDERS].dot(coefficients[:FILTER_LOW_ORDERS])
# Downsample for display
n = len(X)
if n > PLOT_DOWNSAMPLE:
rng = np.random.default_rng(42)
sel = rng.choice(n, size=PLOT_DOWNSAMPLE, replace=False)
Xp, Yp = X[sel], Y[sel]
Wp = W_res_filt[sel]
dxp, dyp, dzp = dx[sel], dy[sel], dz[sel]
else:
Xp, Yp, Wp = X, Y, W_res_filt
dxp, dyp, dzp = dx, dy, dz
res_amp = AMP * Wp
max_amp = float(np.max(np.abs(res_amp))) if res_amp.size else 1.0
# Helper to build mesh trace
def build_mesh_trace(Zp, colorscale, colorbar_title, unit):
try:
tri = Triangulation(Xp, Yp)
if tri.triangles is not None and len(tri.triangles) > 0:
i_idx, j_idx, k_idx = tri.triangles.T
return go.Mesh3d(
x=Xp.tolist(),
y=Yp.tolist(),
z=Zp.tolist(),
i=i_idx.tolist(),
j=j_idx.tolist(),
k=k_idx.tolist(),
intensity=Zp.tolist(),
colorscale=colorscale,
opacity=1.0,
flatshading=False,
lighting=dict(
ambient=0.4, diffuse=0.8, specular=0.3, roughness=0.5, fresnel=0.2
),
lightposition=dict(x=100, y=200, z=300),
showscale=True,
colorbar=dict(
title=dict(text=colorbar_title, side="right"), thickness=15, len=0.5
),
hovertemplate=f"X: %{{x:.1f}}<br>Y: %{{y:.1f}}<br>{unit}: %{{z:.3f}}<extra></extra>",
)
except Exception:
pass
return go.Scatter3d(
x=Xp.tolist(),
y=Yp.tolist(),
z=Zp.tolist(),
mode="markers",
marker=dict(size=2, color=Zp.tolist(), colorscale=colorscale, showscale=True),
)
# Build traces for each view
trace_wfe = build_mesh_trace(res_amp, COLORSCALE, "WFE (nm)", "WFE nm")
trace_dx = build_mesh_trace(dxp, "RdBu_r", "ΔX (µm)", "ΔX µm")
trace_dy = build_mesh_trace(dyp, "RdBu_r", "ΔY (µm)", "ΔY µm")
trace_dz = build_mesh_trace(dzp, "RdBu_r", "ΔZ (µm)", "ΔZ µm")
# Create figure with dropdown to switch views
fig = go.Figure()
# Add all traces (only WFE visible initially)
trace_wfe.visible = True
trace_dx.visible = False
trace_dy.visible = False
trace_dz.visible = False
fig.add_trace(trace_wfe)
fig.add_trace(trace_dx)
fig.add_trace(trace_dy)
fig.add_trace(trace_dz)
# Dropdown menu for view selection
fig.update_layout(
updatemenus=[
dict(
type="buttons",
direction="right",
x=0.0,
y=1.12,
xanchor="left",
showactive=True,
buttons=[
dict(
label="WFE (nm)",
method="update",
args=[{"visible": [True, False, False, False]}],
),
dict(
label="ΔX (µm)",
method="update",
args=[{"visible": [False, True, False, False]}],
),
dict(
label="ΔY (µm)",
method="update",
args=[{"visible": [False, False, True, False]}],
),
dict(
label="ΔZ (µm)",
method="update",
args=[{"visible": [False, False, False, True]}],
),
],
font=dict(size=12),
pad=dict(r=10, t=10),
)
]
)
# Compute method difference
pct_diff = (
100.0 * (rms_filtered_opd - rms_filtered_std) / rms_filtered_std
if rms_filtered_std > 0
else 0.0
)
# Annotations for metrics
method_label = "OPD (X,Y,Z)" if use_opd else "Standard (Z-only)"
annotations_text = f"""
<b>Method:</b> {method_label} {"← More Accurate" if use_opd else "(BDF not found)"}
<b>RMS Metrics (Filtered J1-J4):</b>
• OPD: {rms_filtered_opd:.2f} nm
• Standard: {rms_filtered_std:.2f} nm
• Δ: {pct_diff:+.1f}%
<b>Lateral Displacement:</b>
• Max: {max_lateral:.3f} µm
• RMS: {rms_lateral:.3f} µm
<b>Displacement RMS:</b>
• ΔX: {float(np.sqrt(np.mean(dx**2))):.3f} µm
• ΔY: {float(np.sqrt(np.mean(dy**2))):.3f} µm
• ΔZ: {float(np.sqrt(np.mean(dz**2))):.3f} µm
"""
# Z-axis range for different views
max_disp = max(
float(np.max(np.abs(dxp))),
float(np.max(np.abs(dyp))),
float(np.max(np.abs(dzp))),
0.1,
)
fig.update_layout(
scene=dict(
camera=dict(eye=dict(x=1.2, y=1.2, z=0.8), up=dict(x=0, y=0, z=1)),
xaxis=dict(
title="X (mm)",
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(240,240,240,0.9)",
),
yaxis=dict(
title="Y (mm)",
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(240,240,240,0.9)",
),
zaxis=dict(
title="Value",
showgrid=True,
gridcolor="rgba(128,128,128,0.3)",
showbackground=True,
backgroundcolor="rgba(230,230,250,0.9)",
),
aspectmode="manual",
aspectratio=dict(x=1, y=1, z=0.4),
),
width=1400,
height=900,
margin=dict(t=120, b=20, l=20, r=20),
title=dict(
text=f"<b>{title}</b><br><sup>Click buttons to switch: WFE, ΔX, ΔY, ΔZ</sup>",
font=dict(size=18),
x=0.5,
),
paper_bgcolor="white",
plot_bgcolor="white",
annotations=[
dict(
text=annotations_text.replace("\n", "<br>"),
xref="paper",
yref="paper",
x=1.02,
y=0.98,
xanchor="left",
yanchor="top",
showarrow=False,
font=dict(family="monospace", size=11),
align="left",
bgcolor="rgba(255,255,255,0.9)",
bordercolor="rgba(0,0,0,0.3)",
borderwidth=1,
borderpad=8,
),
dict(
text="<b>View:</b>",
xref="paper",
yref="paper",
x=0.0,
y=1.15,
xanchor="left",
yanchor="top",
showarrow=False,
font=dict(size=12),
),
],
)
html_content = fig.to_html(include_plotlyjs="cdn", full_html=True)
return (
html_content,
rms_global_opd,
rms_filtered_opd,
{
"max_lateral_um": max_lateral,
"rms_lateral_um": rms_lateral,
"method": "opd" if use_opd else "standard",
"rms_std": rms_filtered_std,
"pct_diff": pct_diff,
},
)
# Generate results for each comparison
results = {}
comparisons = [
("3", "2", "40_vs_20", "40 deg vs 20 deg"),
("4", "2", "60_vs_20", "60 deg vs 20 deg"),
("1", "2", "90_vs_20", "90 deg vs 20 deg (manufacturing)"),
]
for target_sc, ref_sc, key, title_suffix in comparisons:
if target_sc not in std_extractor.displacements:
continue
target_angle = SUBCASE_MAP.get(target_sc, target_sc)
ref_angle = SUBCASE_MAP.get(ref_sc, ref_sc)
is_mfg = key == "90_vs_20"
html_content, rms_global, rms_filtered, lateral_stats = generate_dual_method_html(
title=f"iter{trial_number}: {target_angle}° vs {ref_angle}°",
target_sc=target_sc,
ref_sc=ref_sc,
is_manufacturing=is_mfg,
)
results[key] = {
"html": html_content,
"rms_global": rms_global,
"rms_filtered": rms_filtered,
"title": f"{target_angle}° vs {ref_angle}°",
"method": lateral_stats["method"],
"rms_std": lateral_stats["rms_std"],
"pct_diff": lateral_stats["pct_diff"],
"max_lateral_um": lateral_stats["max_lateral_um"],
"rms_lateral_um": lateral_stats["rms_lateral_um"],
}
if not results:
raise HTTPException(
status_code=500,
detail="Failed to generate Zernike analysis. Check if subcases are available.",
)
return {
"study_id": study_id,
"trial_number": trial_number,
"comparisons": results,
"available_comparisons": list(results.keys()),
"method": "opd" if use_opd else "standard",
}
except HTTPException:
raise
except Exception as e:
import traceback
traceback.print_exc()
raise HTTPException(
status_code=500, detail=f"Failed to generate Zernike analysis: {str(e)}"
)
@router.get("/studies/{study_id}/export/{format}")
async def export_study_data(study_id: str, format: str):
"""Export study data in various formats: csv, json, excel"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study '{study_id}' not found")
results_dir = get_results_dir(study_dir)
db_path = results_dir / "study.db"
if not db_path.exists():
raise HTTPException(status_code=404, detail="No study data available")
conn = sqlite3.connect(str(db_path))
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
# Get all completed trials with their params and values
cursor.execute("""
SELECT t.trial_id, t.number, tv.value as objective
FROM trials t
JOIN trial_values tv ON t.trial_id = tv.trial_id
WHERE t.state = 'COMPLETE'
ORDER BY t.number
""")
trials_data = []
for row in cursor.fetchall():
trial_id = row["trial_id"]
# Get params
cursor.execute(
"""
SELECT param_name, param_value
FROM trial_params
WHERE trial_id = ?
""",
(trial_id,),
)
params = {r["param_name"]: r["param_value"] for r in cursor.fetchall()}
# Get user attrs
cursor.execute(
"""
SELECT key, value_json
FROM trial_user_attributes
WHERE trial_id = ?
""",
(trial_id,),
)
user_attrs = {}
for r in cursor.fetchall():
try:
user_attrs[r["key"]] = json.loads(r["value_json"])
except:
user_attrs[r["key"]] = r["value_json"]
trials_data.append(
{
"trial_number": row["number"],
"objective": row["objective"],
"params": params,
"user_attrs": user_attrs,
}
)
conn.close()
if format.lower() == "json":
return JSONResponse(
content={
"study_id": study_id,
"total_trials": len(trials_data),
"trials": trials_data,
}
)
elif format.lower() == "csv":
import io
import csv
if not trials_data:
return JSONResponse(content={"error": "No data to export"})
# Build CSV
output = io.StringIO()
# Get all param names
param_names = sorted(
set(key for trial in trials_data for key in trial["params"].keys())
)
fieldnames = ["trial_number", "objective"] + param_names
writer = csv.DictWriter(output, fieldnames=fieldnames)
writer.writeheader()
for trial in trials_data:
row_data = {"trial_number": trial["trial_number"], "objective": trial["objective"]}
row_data.update(trial["params"])
writer.writerow(row_data)
csv_content = output.getvalue()
return JSONResponse(
content={
"filename": f"{study_id}_data.csv",
"content": csv_content,
"content_type": "text/csv",
}
)
elif format.lower() == "config":
# Export optimization config
setup_dir = study_dir / "1_setup"
config_path = setup_dir / "optimization_config.json"
if config_path.exists():
with open(config_path, "r") as f:
config = json.load(f)
return JSONResponse(
content={
"filename": f"{study_id}_config.json",
"content": json.dumps(config, indent=2),
"content_type": "application/json",
}
)
else:
raise HTTPException(status_code=404, detail="Config file not found")
else:
raise HTTPException(status_code=400, detail=f"Unsupported format: {format}")
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to export data: {str(e)}")
# ============================================================================
# NX Model Introspection Endpoints
# ============================================================================
def scan_nx_file_dependencies(model_dir: Path) -> dict:
"""
Scan a model directory for NX files and build a dependency tree.
This uses file naming conventions to determine relationships:
- .sim files reference .afm (assembly FEM) or .fem files
- .afm files reference multiple .fem files
- .fem files reference _i.prt (idealized) files
- _i.prt files are derived from .prt (geometry) files
Returns:
Dictionary with file lists and dependency tree
"""
result = {
"files": {
"sim": [], # Simulation files
"afm": [], # Assembly FEM files
"fem": [], # FEM files
"prt": [], # Part/geometry files
"idealized": [], # Idealized parts (*_i.prt)
},
"dependencies": [], # List of {source, target, type} edges
"root_sim": None,
}
# Collect all files by type
for f in model_dir.iterdir():
if not f.is_file():
continue
name = f.name.lower()
if name.endswith(".sim"):
result["files"]["sim"].append(f.name)
elif name.endswith(".afm"):
result["files"]["afm"].append(f.name)
elif name.endswith(".fem"):
result["files"]["fem"].append(f.name)
elif name.endswith("_i.prt"):
result["files"]["idealized"].append(f.name)
elif name.endswith(".prt"):
result["files"]["prt"].append(f.name)
# Build dependency edges based on NX naming conventions
# SIM -> AFM: SIM file basename matches AFM (e.g., ASSY_M1_assyfem1_sim1.sim -> ASSY_M1_assyfem1.afm)
for sim in result["files"]["sim"]:
sim_base = sim.lower().replace(".sim", "")
# Remove _sim1, _sim2 suffix to get AFM name
afm_base = sim_base.rsplit("_sim", 1)[0] if "_sim" in sim_base else sim_base
# Check for matching AFM
for afm in result["files"]["afm"]:
if afm.lower().replace(".afm", "") == afm_base:
result["dependencies"].append({"source": sim, "target": afm, "type": "sim_to_afm"})
break
else:
# No AFM, check for direct FEM reference
for fem in result["files"]["fem"]:
fem_base = fem.lower().replace(".fem", "")
if afm_base.endswith(fem_base) or fem_base in afm_base:
result["dependencies"].append(
{"source": sim, "target": fem, "type": "sim_to_fem"}
)
break
# Set root sim (first one found)
if result["root_sim"] is None:
result["root_sim"] = sim
# AFM -> FEM: Assembly FEM references component FEMs
# Convention: AFM basename often contains assembly name, FEMs have component names
for afm in result["files"]["afm"]:
afm_base = afm.lower().replace(".afm", "")
# Get the assembly prefix (e.g., ASSY_M1_assyfem1 -> ASSY_M1)
parts = afm_base.split("_")
for fem in result["files"]["fem"]:
fem_base = fem.lower().replace(".fem", "")
# FEM is likely a component if it's not the assembly FEM itself
if fem_base != afm_base:
result["dependencies"].append({"source": afm, "target": fem, "type": "afm_to_fem"})
# FEM -> Idealized PRT: FEM references idealized geometry
# Convention: Model_fem1.fem -> Model_fem1_i.prt
for fem in result["files"]["fem"]:
fem_base = fem.lower().replace(".fem", "")
for idealized in result["files"]["idealized"]:
idealized_base = idealized.lower().replace("_i.prt", "")
if idealized_base == fem_base:
result["dependencies"].append(
{"source": fem, "target": idealized, "type": "fem_to_idealized"}
)
break
# Idealized PRT -> PRT: Idealized part derives from geometry
# Convention: Model_fem1_i.prt -> Model.prt
for idealized in result["files"]["idealized"]:
idealized_base = idealized.lower().replace("_i.prt", "")
# Remove fem suffix to get geometry name (Model_fem1_i -> Model)
geom_base = (
idealized_base.rsplit("_fem", 1)[0] if "_fem" in idealized_base else idealized_base
)
for prt in result["files"]["prt"]:
prt_base = prt.lower().replace(".prt", "")
if prt_base == geom_base:
result["dependencies"].append(
{"source": idealized, "target": prt, "type": "idealized_to_prt"}
)
break
return result
def scan_existing_fea_results(study_dir: Path) -> dict:
"""
Scan study for existing FEA result files (.op2, .f06, .bdf/.dat).
Checks:
1. 1_setup/model/ - results from manual NX runs
2. 2_iterations/iter0/ or trial_baseline/ - baseline results
3. 2_iterations/iter{N}/ - latest completed iteration
Returns dict with paths to existing results that can be used for extraction.
"""
result = {
"has_results": False,
"sources": [], # List of {location, op2, f06, bdf, timestamp}
"recommended": None, # Best source to use
}
# Check model directory
model_dir = study_dir / "1_setup" / "model"
if model_dir.exists():
op2_files = list(model_dir.glob("*.op2"))
f06_files = list(model_dir.glob("*.f06"))
dat_files = list(model_dir.glob("*.dat"))
if op2_files or f06_files:
source = {
"location": "model",
"path": str(model_dir),
"op2": [f.name for f in op2_files],
"f06": [f.name for f in f06_files],
"bdf": [f.name for f in dat_files],
}
if op2_files:
source["timestamp"] = op2_files[0].stat().st_mtime
result["sources"].append(source)
# Check iterations directory
iter_dir = study_dir / "2_iterations"
if iter_dir.exists():
# Check for baseline (iter0 or trial_baseline)
for baseline_name in ["iter0", "trial_baseline"]:
baseline_dir = iter_dir / baseline_name
if baseline_dir.exists():
op2_files = list(baseline_dir.glob("*.op2"))
f06_files = list(baseline_dir.glob("*.f06"))
dat_files = list(baseline_dir.glob("*.dat"))
if op2_files or f06_files:
source = {
"location": f"iterations/{baseline_name}",
"path": str(baseline_dir),
"op2": [f.name for f in op2_files],
"f06": [f.name for f in f06_files],
"bdf": [f.name for f in dat_files],
}
if op2_files:
source["timestamp"] = op2_files[0].stat().st_mtime
result["sources"].append(source)
# Find latest iteration with results
iter_folders = sorted(
[d for d in iter_dir.iterdir() if d.is_dir() and d.name.startswith("iter")],
key=lambda d: int(d.name.replace("iter", ""))
if d.name.replace("iter", "").isdigit()
else 0,
reverse=True,
)
for iter_folder in iter_folders[:3]: # Check top 3 most recent
op2_files = list(iter_folder.glob("*.op2"))
if op2_files:
f06_files = list(iter_folder.glob("*.f06"))
dat_files = list(iter_folder.glob("*.dat"))
source = {
"location": f"iterations/{iter_folder.name}",
"path": str(iter_folder),
"op2": [f.name for f in op2_files],
"f06": [f.name for f in f06_files],
"bdf": [f.name for f in dat_files],
"timestamp": op2_files[0].stat().st_mtime,
}
result["sources"].append(source)
break # Found latest with results
# Determine if we have usable results
if result["sources"]:
result["has_results"] = True
# Recommend the most recent source with OP2
sources_with_op2 = [s for s in result["sources"] if s.get("op2")]
if sources_with_op2:
result["recommended"] = max(sources_with_op2, key=lambda s: s.get("timestamp", 0))
return result
@router.get("/studies/{study_id}/nx/introspect")
async def introspect_nx_model(study_id: str, force: bool = False):
"""
Introspect NX model to extract expressions and properties.
Uses the optimization_engine.extractors.introspect_part module to run
NX journal that extracts expressions, mass properties, materials, etc.
Args:
study_id: Study identifier
force: Force re-introspection even if cached results exist
Returns:
JSON with introspection results including expressions list
"""
try:
study_dir = resolve_study_path(study_id)
print(f"[introspect] study_id={study_id}, study_dir={study_dir}")
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find model directory - check multiple possible locations
model_dir = None
possible_dirs = [
study_dir / "1_setup" / "model", # Standard Atomizer structure
study_dir / "1_model",
study_dir / "0_model",
study_dir / "model",
study_dir / "1_setup", # Model files directly in 1_setup
]
for possible_dir in possible_dirs:
if possible_dir.exists():
prt_files = list(possible_dir.glob("*.prt"))
print(
f"[introspect] checking {possible_dir}: exists=True, prt_count={len(prt_files)}"
)
if prt_files:
model_dir = possible_dir
break
else:
print(f"[introspect] checking {possible_dir}: exists=False")
if model_dir is None:
detail = f"[V2] No model dir for {study_id} in {study_dir}"
raise HTTPException(status_code=404, detail=detail)
# Find .prt file
prt_files = list(model_dir.glob("*.prt"))
# Exclude idealized parts
prt_files = [f for f in prt_files if "_i.prt" not in f.name.lower()]
if not prt_files:
raise HTTPException(status_code=404, detail=f"No .prt files found in {model_dir}")
prt_file = prt_files[0] # Use first non-idealized part
# Check for cached results
cache_file = model_dir / "_introspection_cache.json"
if cache_file.exists() and not force:
try:
with open(cache_file, "r") as f:
cached = json.load(f)
# Check if cache is for same file
if cached.get("part_file") == str(prt_file):
return {"study_id": study_id, "cached": True, "introspection": cached}
except:
pass # Invalid cache, re-run
# Scan file dependencies (fast, doesn't need NX)
file_deps = scan_nx_file_dependencies(model_dir)
# Scan for existing FEA results (OP2, F06, etc.) - no NX needed!
existing_results = scan_existing_fea_results(study_dir)
# Run introspection
try:
from optimization_engine.extractors.introspect_part import introspect_part
result = introspect_part(str(prt_file), str(model_dir), verbose=False)
# Add file dependencies to result
result["file_dependencies"] = file_deps
# Add existing FEA results info
result["existing_fea_results"] = existing_results
# Cache results
with open(cache_file, "w") as f:
json.dump(result, f, indent=2)
return {"study_id": study_id, "cached": False, "introspection": result}
except ImportError:
# If introspect_part not available, return just file dependencies and existing results
return {
"study_id": study_id,
"cached": False,
"introspection": {
"success": False,
"error": "introspect_part module not available",
"file_dependencies": file_deps,
"existing_fea_results": existing_results,
},
}
except Exception as e:
raise HTTPException(status_code=500, detail=f"Introspection failed: {str(e)}")
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to introspect: {str(e)}")
@router.post("/studies/{study_id}/nx/run-baseline")
async def run_baseline_simulation(study_id: str):
"""
Run a baseline FEA simulation with current/default parameter values.
Uses the same NXSolver pattern as run_optimization.py:
1. NXSolver with use_iteration_folders=True and master_model_dir
2. create_iteration_folder() to copy model files properly
3. run_simulation() with the copied .sim file
This ensures all NX file dependencies are handled correctly.
Args:
study_id: Study identifier
Returns:
JSON with baseline run status and paths to result files
"""
import re
import time
try:
study_dir = resolve_study_path(study_id)
print(f"[run-baseline] study_id={study_id}, study_dir={study_dir}")
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find model directory
model_dir = None
for possible_dir in [
study_dir / "1_setup" / "model",
study_dir / "1_model",
study_dir / "0_model",
study_dir / "model",
study_dir / "1_setup",
]:
if possible_dir.exists() and list(possible_dir.glob("*.sim")):
model_dir = possible_dir
break
if model_dir is None:
raise HTTPException(
status_code=404, detail=f"No model directory with .sim file found for {study_id}"
)
# Find .sim file
sim_files = list(model_dir.glob("*.sim"))
if not sim_files:
raise HTTPException(status_code=404, detail=f"No .sim file found in {model_dir}")
sim_file = sim_files[0]
print(f"[run-baseline] sim_file={sim_file.name}")
print(f"[run-baseline] model_dir={model_dir}")
# Ensure iterations directory exists
iterations_dir = study_dir / "2_iterations"
iterations_dir.mkdir(exist_ok=True)
# Try to run the solver using the same pattern as run_optimization.py
try:
from optimization_engine.nx.solver import NXSolver
from pathlib import Path as P
# Load config/spec for NX settings
spec_file = study_dir / "atomizer_spec.json"
config_file = study_dir / "1_setup" / "optimization_config.json"
nx_install_path = None
sim_file_name = sim_file.name
solution_name = "Solution 1"
# Try to get settings from spec or config
if spec_file.exists():
with open(spec_file) as f:
spec_data = json.load(f)
nx_settings = spec_data.get("model", {}).get("nx_settings", {})
nx_install_path = nx_settings.get("nx_install_path")
sim_file_name = nx_settings.get("sim_file", sim_file.name)
solution_name = nx_settings.get("solution_name", "Solution 1")
elif config_file.exists():
with open(config_file) as f:
config_data = json.load(f)
nx_settings = config_data.get("nx_settings", {})
nx_install_path = nx_settings.get("nx_install_path")
sim_file_name = nx_settings.get("sim_file", sim_file.name)
solution_name = nx_settings.get("solution_name", "Solution 1")
# Default to common installation path if not in spec/config
if not nx_install_path:
for candidate in [
"C:/Program Files/Siemens/DesigncenterNX2512",
"C:/Program Files/Siemens/NX2506",
"C:/Program Files/Siemens/NX2412",
]:
if P(candidate).exists():
nx_install_path = candidate
break
# Extract version from path
version_match = re.search(r"NX(\d+)|DesigncenterNX(\d+)", nx_install_path or "")
nastran_version = (
(version_match.group(1) or version_match.group(2)) if version_match else "2512"
)
print(f"[run-baseline] NX install: {nx_install_path}")
print(f"[run-baseline] Nastran version: {nastran_version}")
print(f"[run-baseline] Solution: {solution_name}")
# Create solver with iteration folder support (same as run_optimization.py)
solver = NXSolver(
master_model_dir=str(model_dir), # Source of model files
nx_install_dir=nx_install_path,
nastran_version=nastran_version,
timeout=600,
use_journal=True,
use_iteration_folders=True, # Key: let NXSolver handle file copying
study_name=study_id,
)
# Create iteration folder (this copies all model files properly)
# Use iteration number 0 for baseline
print(f"[run-baseline] Creating iteration folder...")
iter_folder = solver.create_iteration_folder(
iterations_base_dir=iterations_dir,
iteration_number=0, # baseline = iter0
expression_updates=None, # No expression changes for baseline
)
print(f"[run-baseline] Iteration folder: {iter_folder}")
# Find the sim file in the iteration folder
iter_sim_file = iter_folder / sim_file_name
if not iter_sim_file.exists():
# Try to find any .sim file
sim_files_in_iter = list(iter_folder.glob("*.sim"))
if sim_files_in_iter:
iter_sim_file = sim_files_in_iter[0]
else:
raise FileNotFoundError(f"No .sim file found in {iter_folder}")
print(f"[run-baseline] Running simulation: {iter_sim_file.name}")
t_start = time.time()
result = solver.run_simulation(
sim_file=iter_sim_file,
working_dir=iter_folder,
cleanup=False, # Keep all files for inspection
expression_updates=None, # Use baseline values
solution_name=solution_name,
)
elapsed = time.time() - t_start
print(
f"[run-baseline] Simulation completed in {elapsed:.1f}s, success={result.get('success')}"
)
# Find result files
op2_files = list(iter_folder.glob("*.op2"))
f06_files = list(iter_folder.glob("*.f06"))
bdf_files = list(iter_folder.glob("*.bdf")) + list(iter_folder.glob("*.dat"))
log_files = list(iter_folder.glob("*.log"))
# Parse Nastran log for specific error messages
error_details = result.get("errors", [])
memory_error = False
if not result.get("success") and log_files:
try:
with open(log_files[0], "r") as f:
log_content = f.read()
if "Unable to allocate requested memory" in log_content:
memory_error = True
mem_match = re.search(r"Requested size = (\d+) Gbytes", log_content)
avail_match = re.search(
r"Physical memory available:\s+(\d+) MB", log_content
)
if mem_match and avail_match:
requested = int(mem_match.group(1))
available = int(avail_match.group(1)) / 1024
error_details.append(
f"Nastran memory allocation failed: Requested {requested}GB but only {available:.1f}GB available. "
"Try closing other applications or reduce memory in nastran.rcf"
)
except Exception:
pass
return {
"success": result.get("success", False),
"study_id": study_id,
"baseline_dir": str(iter_folder),
"sim_file": str(iter_sim_file),
"elapsed_time": elapsed,
"result_files": {
"op2": [f.name for f in op2_files],
"f06": [f.name for f in f06_files],
"bdf": [f.name for f in bdf_files],
"log": [f.name for f in log_files],
},
"errors": error_details,
"message": "Baseline simulation complete"
if result.get("success")
else (
"Nastran out of memory - close other applications and retry"
if memory_error
else "Simulation failed"
),
}
except ImportError as e:
return {
"success": False,
"study_id": study_id,
"baseline_dir": str(baseline_dir),
"error": f"NXSolver not available: {str(e)}",
"message": "Model files copied but solver not available. Run manually in NX.",
}
except Exception as e:
return {
"success": False,
"study_id": study_id,
"baseline_dir": str(baseline_dir),
"error": str(e),
"message": f"Solver execution failed: {str(e)}",
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to run baseline: {str(e)}")
class ExtractRequest(BaseModel):
op2_path: Optional[str] = None
extractors: Optional[List[str]] = None
@router.post("/studies/{study_id}/nx/extract")
async def extract_from_existing_results(
study_id: str,
request: ExtractRequest = None,
):
"""
Extract physics data from existing FEA result files (OP2/F06).
NO NX SOLVE NEEDED - uses PyNastran and Atomizer extractors directly
on existing result files.
Args:
study_id: Study identifier
request.op2_path: Optional specific OP2 file path. If not provided, uses latest available.
request.extractors: List of extractor IDs to run. If not provided, runs defaults.
Options: ["displacement", "stress", "frequency", "mass_bdf", "zernike"]
Returns:
JSON with extracted physics data from each extractor
"""
from pathlib import Path as P
# Handle optional request body
op2_path = request.op2_path if request else None
extractors = request.extractors if request else None
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find OP2 file to use
target_op2 = None
target_dir = None
if op2_path:
# Use specified path
target_op2 = P(op2_path)
if not target_op2.exists():
raise HTTPException(status_code=404, detail=f"OP2 file not found: {op2_path}")
target_dir = target_op2.parent
else:
# Auto-detect from existing results
existing = scan_existing_fea_results(study_dir)
if not existing["has_results"]:
raise HTTPException(
status_code=404,
detail="No existing FEA results found. Run baseline first or provide op2_path.",
)
recommended = existing["recommended"]
if not recommended or not recommended.get("op2"):
raise HTTPException(status_code=404, detail="No OP2 files found in study")
target_dir = P(recommended["path"])
target_op2 = target_dir / recommended["op2"][0]
print(f"[extract] Using OP2: {target_op2}")
# Find associated BDF/DAT file
bdf_file = None
for ext in [".bdf", ".dat"]:
candidate = target_op2.with_suffix(ext)
if candidate.exists():
bdf_file = candidate
break
# Run extractors
results = {
"study_id": study_id,
"op2_file": str(target_op2),
"bdf_file": str(bdf_file) if bdf_file else None,
"extractions": {},
"errors": [],
}
# Default extractors if not specified
if not extractors:
extractors = ["displacement", "mass_bdf"]
# Import extractors as needed
# Note: extractors are modules with same-named functions inside
for ext_id in extractors:
try:
if ext_id == "displacement":
from optimization_engine.extractors.extract_displacement import (
extract_displacement,
)
disp = extract_displacement(str(target_op2))
results["extractions"]["displacement"] = disp
elif ext_id == "stress":
from optimization_engine.extractors.extract_solid_stress import (
extract_solid_stress,
)
stress = extract_solid_stress(str(target_op2))
results["extractions"]["stress"] = stress
elif ext_id == "frequency":
from optimization_engine.extractors.extract_frequency import extract_frequency
freq = extract_frequency(str(target_op2))
results["extractions"]["frequency"] = freq
elif ext_id == "mass_bdf":
if bdf_file:
from optimization_engine.extractors.extract_mass_from_bdf import (
extract_mass_from_bdf,
)
mass = extract_mass_from_bdf(str(bdf_file))
results["extractions"]["mass_bdf"] = mass
else:
results["errors"].append("mass_bdf: No BDF file found")
elif ext_id == "zernike":
from optimization_engine.extractors.extract_zernike_opd import (
ZernikeOPDExtractor,
)
extractor = ZernikeOPDExtractor(
str(target_op2),
bdf_path=str(bdf_file) if bdf_file else None,
n_modes=36,
)
# Extract for subcase 1 (or first available)
try:
zernike_result = extractor.extract_subcase("1")
results["extractions"]["zernike"] = {
"subcase": "1",
"rms_nm": zernike_result.get("filtered_rms_nm"),
"peak_valley_nm": zernike_result.get("peak_to_valley_nm"),
"coefficients": zernike_result.get("coefficients", [])[:10]
if zernike_result.get("coefficients")
else [],
}
except Exception as ze:
results["errors"].append(f"zernike: {str(ze)}")
else:
results["errors"].append(f"Unknown extractor: {ext_id}")
except ImportError as ie:
results["errors"].append(f"{ext_id}: Module not available - {str(ie)}")
except Exception as e:
results["errors"].append(f"{ext_id}: {str(e)}")
results["success"] = len(results["extractions"]) > 0
return results
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Extraction failed: {str(e)}")
@router.get("/studies/{study_id}/nx/expressions")
async def get_nx_expressions(study_id: str):
"""
Get just the expressions from NX model (simplified endpoint).
Returns list of user expressions suitable for design variable selection.
Args:
study_id: Study identifier
Returns:
JSON with expressions array containing name, value, units, formula
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find model directory - check multiple possible locations
model_dir = None
for possible_dir in [
study_dir / "1_setup" / "model", # Standard Atomizer structure
study_dir / "1_model",
study_dir / "0_model",
study_dir / "model",
study_dir / "1_setup", # Model files directly in 1_setup
]:
if possible_dir.exists():
# Check if it has .prt files
if list(possible_dir.glob("*.prt")):
model_dir = possible_dir
break
if model_dir is None:
raise HTTPException(
status_code=404, detail=f"[expr] No model dir for {study_id} in {study_dir}"
)
# Check cache first
cache_file = model_dir / "_introspection_cache.json"
if cache_file.exists():
with open(cache_file, "r") as f:
cached = json.load(f)
expressions = cached.get("expressions", {}).get("user", [])
return {"study_id": study_id, "expressions": expressions, "count": len(expressions)}
# No cache, need to run introspection
prt_files = list(model_dir.glob("*.prt"))
prt_files = [f for f in prt_files if "_i.prt" not in f.name.lower()]
if not prt_files:
raise HTTPException(status_code=404, detail=f"No .prt files found")
prt_file = prt_files[0]
try:
from optimization_engine.extractors.introspect_part import introspect_part
result = introspect_part(str(prt_file), str(model_dir), verbose=False)
# Cache for future
with open(cache_file, "w") as f:
json.dump(result, f, indent=2)
expressions = result.get("expressions", {}).get("user", [])
return {"study_id": study_id, "expressions": expressions, "count": len(expressions)}
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get expressions: {str(e)}")
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to get expressions: {str(e)}")
def introspect_fem_file(fem_path: Path) -> dict:
"""
Introspect a .fem or .afm file using PyNastran.
Extracts: element counts, material info, property info, node count, etc.
"""
result = {
"file_type": "fem",
"file_name": fem_path.name,
"success": False,
}
try:
from pyNastran.bdf.bdf import BDF
# Read BDF/FEM file
bdf = BDF()
bdf.read_bdf(str(fem_path), xref=False)
# Extract info
result["success"] = True
result["nodes"] = {
"count": len(bdf.nodes),
}
# Element counts by type
element_counts = {}
for eid, elem in bdf.elements.items():
elem_type = elem.type
element_counts[elem_type] = element_counts.get(elem_type, 0) + 1
result["elements"] = {
"total": len(bdf.elements),
"by_type": element_counts,
}
# Materials
materials = []
for mid, mat in bdf.materials.items():
mat_info = {"id": mid, "type": mat.type}
if hasattr(mat, "e"):
mat_info["E"] = mat.e
if hasattr(mat, "nu"):
mat_info["nu"] = mat.nu
if hasattr(mat, "rho"):
mat_info["rho"] = mat.rho
materials.append(mat_info)
result["materials"] = materials
# Properties
properties = []
for pid, prop in bdf.properties.items():
prop_info = {"id": pid, "type": prop.type}
properties.append(prop_info)
result["properties"] = properties
# Coordinate systems
result["coord_systems"] = len(bdf.coords)
# Loads and constraints summary
result["loads"] = {
"load_cases": len(bdf.loads),
}
result["constraints"] = {
"spcs": len(bdf.spcs),
"mpcs": len(bdf.mpcs),
}
except ImportError:
result["error"] = "PyNastran not available"
except Exception as e:
result["error"] = str(e)
return result
def introspect_sim_file(sim_path: Path, use_nx: bool = True) -> dict:
"""
Introspect a .sim file - extract solution info.
Args:
sim_path: Path to the .sim file
use_nx: If True, use NX journal for full introspection (requires NX license)
If False, use file-based heuristics only
Note: .sim is a binary NX format. Full introspection requires NX Open.
"""
result = {
"file_type": "sim",
"file_name": sim_path.name,
"success": True,
}
# Try NX journal introspection if requested
if use_nx:
try:
import subprocess
import json
# Find NX installation
nx_paths = [
Path("C:/Program Files/Siemens/DesigncenterNX2512/NXBIN/run_journal.exe"),
Path("C:/Program Files/Siemens/NX2412/NXBIN/run_journal.exe"),
Path("C:/Program Files/Siemens/Simcenter3D_2412/NXBIN/run_journal.exe"),
]
journal_runner = None
for p in nx_paths:
if p.exists():
journal_runner = p
break
if journal_runner:
journal_path = (
Path(__file__).parent.parent.parent.parent.parent
/ "nx_journals"
/ "introspect_sim.py"
)
if not journal_path.exists():
# Try alternate path
journal_path = Path("C:/Users/antoi/Atomizer/nx_journals/introspect_sim.py")
if journal_path.exists():
cmd = [
str(journal_runner),
str(journal_path),
str(sim_path),
str(sim_path.parent),
]
# Run NX journal with timeout
proc = subprocess.run(
cmd, capture_output=True, text=True, timeout=120, cwd=str(sim_path.parent)
)
# Check for output file
output_file = sim_path.parent / "_introspection_sim.json"
if output_file.exists():
with open(output_file, "r") as f:
nx_result = json.load(f)
result.update(nx_result)
result["introspection_method"] = "nx_journal"
return result
else:
result["nx_error"] = "Journal completed but no output file"
result["nx_stdout"] = proc.stdout[-2000:] if proc.stdout else None
result["nx_stderr"] = proc.stderr[-2000:] if proc.stderr else None
else:
result["nx_error"] = f"Journal not found: {journal_path}"
else:
result["nx_error"] = "NX installation not found"
except subprocess.TimeoutExpired:
result["nx_error"] = "NX journal timed out (120s)"
except Exception as e:
result["nx_error"] = f"NX introspection failed: {str(e)}"
# Fallback: file-based heuristics
result["introspection_method"] = "file_heuristics"
result["note"] = "SIM files are binary NX format. NX introspection unavailable."
# Check for associated .dat file that might have been exported
dat_file = sim_path.parent / (sim_path.stem + ".dat")
if not dat_file.exists():
# Try common naming patterns
for f in sim_path.parent.glob("*solution*.dat"):
dat_file = f
break
if dat_file.exists():
result["associated_dat"] = dat_file.name
# Try to infer solver type from related files
parent_dir = sim_path.parent
if any(f.suffix.lower() == ".afm" for f in parent_dir.iterdir() if f.is_file()):
result["inferred"] = {"assembly_fem": True, "solver": "nastran"}
elif any(f.suffix.lower() == ".fem" for f in parent_dir.iterdir() if f.is_file()):
result["inferred"] = {"assembly_fem": False, "solver": "nastran"}
return result
@router.get("/studies/{study_id}/nx/introspect/{file_name}")
async def introspect_specific_file(study_id: str, file_name: str, force: bool = False):
"""
Introspect a specific file in the model directory.
Supports ALL NX file types:
- .prt / _i.prt - Uses NX journal to extract expressions, mass, etc.
- .fem / .afm - Uses PyNastran to extract mesh info, materials, properties
- .sim - Extracts simulation/solution info
Args:
study_id: Study identifier
file_name: Name of the file (e.g., "M1_Blank.prt", "M1_Blank_fem1.fem")
force: Force re-introspection even if cached
Returns:
JSON with introspection results appropriate for the file type
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find model directory
model_dir = None
for possible_dir in [
study_dir / "1_setup" / "model",
study_dir / "1_model",
study_dir / "model",
study_dir / "1_setup",
]:
if possible_dir.exists():
model_dir = possible_dir
break
if model_dir is None:
raise HTTPException(status_code=404, detail=f"No model directory found for {study_id}")
# Determine file type and find the file
file_name_lower = file_name.lower()
target_file = None
file_type = None
# Add extension if missing
if "." not in file_name:
# Try common extensions in order
for ext in [".prt", ".fem", ".afm", ".sim"]:
candidate = model_dir / (file_name + ext)
if candidate.exists():
target_file = candidate
file_type = ext[1:] # Remove leading dot
break
else:
# Has extension, find exact match (case-insensitive)
for f in model_dir.iterdir():
if f.name.lower() == file_name_lower:
target_file = f
if "_i.prt" in f.name.lower():
file_type = "idealized"
elif f.suffix.lower() == ".prt":
file_type = "prt"
elif f.suffix.lower() == ".fem":
file_type = "fem"
elif f.suffix.lower() == ".afm":
file_type = "afm"
elif f.suffix.lower() == ".sim":
file_type = "sim"
break
if target_file is None:
# List available files for helpful error
available = [
f.name
for f in model_dir.iterdir()
if f.is_file() and f.suffix.lower() in [".prt", ".fem", ".afm", ".sim"]
]
raise HTTPException(
status_code=404, detail=f"File '{file_name}' not found. Available: {available}"
)
# Check cache
cache_file = model_dir / f"_introspection_{target_file.stem}.json"
if cache_file.exists() and not force:
try:
with open(cache_file, "r") as f:
cached = json.load(f)
return {
"study_id": study_id,
"file_name": target_file.name,
"file_type": file_type,
"cached": True,
"introspection": cached,
}
except:
pass
# Run appropriate introspection based on file type
result = None
if file_type in ["prt", "idealized"]:
# Use NX journal introspection for .prt files
try:
from optimization_engine.extractors.introspect_part import introspect_part
result = introspect_part(str(target_file), str(model_dir), verbose=False)
except ImportError:
result = {"success": False, "error": "introspect_part module not available"}
except Exception as e:
result = {"success": False, "error": str(e)}
elif file_type in ["fem", "afm"]:
# Use PyNastran for FEM files
result = introspect_fem_file(target_file)
elif file_type == "sim":
# Extract what we can from SIM file
result = introspect_sim_file(target_file)
if result is None:
result = {"success": False, "error": f"Unknown file type: {file_type}"}
# Cache results
try:
with open(cache_file, "w") as f:
json.dump(result, f, indent=2)
except Exception:
pass # Caching is optional
return {
"study_id": study_id,
"file_name": target_file.name,
"file_type": file_type,
"cached": False,
"introspection": result,
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to introspect file: {str(e)}")
@router.get("/studies/{study_id}/nx/parts")
async def list_model_files(study_id: str):
"""
List all NX model files in the study's model directory.
Includes ALL file types in the NX dependency chain:
- .sim (Simulation) - loads, BCs, solution settings
- .afm (Assembly FEM) - assembly of component FEMs
- .fem (FEM) - mesh, materials, properties
- _i.prt (Idealized) - simplified geometry for meshing
- .prt (Geometry) - full CAD geometry with expressions
Returns:
JSON with categorized list of all model files
"""
try:
study_dir = resolve_study_path(study_id)
if not study_dir.exists():
raise HTTPException(status_code=404, detail=f"Study {study_id} not found")
# Find model directory
model_dir = None
for possible_dir in [
study_dir / "1_setup" / "model",
study_dir / "1_model",
study_dir / "model",
study_dir / "1_setup",
]:
if possible_dir.exists():
model_dir = possible_dir
break
if model_dir is None:
raise HTTPException(status_code=404, detail=f"No model directory found for {study_id}")
# Collect all NX files by type
files = {
"sim": [], # Simulation files
"afm": [], # Assembly FEM files
"fem": [], # FEM files
"idealized": [], # Idealized parts (*_i.prt)
"prt": [], # Geometry parts
}
for f in sorted(model_dir.iterdir()):
if not f.is_file():
continue
name_lower = f.name.lower()
file_info = {
"name": f.name,
"stem": f.stem,
"size_kb": round(f.stat().st_size / 1024, 1),
"has_cache": (model_dir / f"_introspection_{f.stem}.json").exists(),
}
if name_lower.endswith(".sim"):
file_info["type"] = "sim"
file_info["description"] = "Simulation (loads, BCs, solutions)"
files["sim"].append(file_info)
elif name_lower.endswith(".afm"):
file_info["type"] = "afm"
file_info["description"] = "Assembly FEM"
files["afm"].append(file_info)
elif name_lower.endswith(".fem"):
file_info["type"] = "fem"
file_info["description"] = "FEM (mesh, materials, properties)"
files["fem"].append(file_info)
elif "_i.prt" in name_lower:
file_info["type"] = "idealized"
file_info["description"] = "Idealized geometry for meshing"
files["idealized"].append(file_info)
elif name_lower.endswith(".prt"):
file_info["type"] = "prt"
file_info["description"] = "CAD geometry with expressions"
files["prt"].append(file_info)
# Build flat list for dropdown (all introspectable files)
all_files = []
for category in ["sim", "afm", "fem", "idealized", "prt"]:
all_files.extend(files[category])
return {
"study_id": study_id,
"model_dir": str(model_dir),
"files": files,
"all_files": all_files,
"count": len(all_files),
}
except HTTPException:
raise
except Exception as e:
raise HTTPException(status_code=500, detail=f"Failed to list model files: {str(e)}")
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