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## Removed Duplicate Directories - Deleted old `dashboard/` (replaced by atomizer-dashboard) - Deleted old `mcp_server/` Python tools (moved model_discovery to optimization_engine) - Deleted `tests/mcp_server/` (obsolete tests) - Deleted `launch_dashboard.bat` (old launcher) ## Consolidated Code - Moved `mcp_server/tools/model_discovery.py` to `optimization_engine/model_discovery/` - Updated import in `optimization_config_builder.py` - Deleted stub `extract_mass.py` (use extract_mass_from_bdf instead) - Deleted unused `intelligent_setup.py` and `hybrid_study_creator.py` - Archived `result_extractors/` to `archive/deprecated/` ## Documentation Cleanup - Deleted deprecated `docs/06_PROTOCOLS_DETAILED/` (14 files) - Archived dated dev docs to `docs/08_ARCHIVE/sessions/` - Archived old plans to `docs/08_ARCHIVE/plans/` - Updated `docs/protocols/README.md` with SYS_15 ## Skills Consolidation - Archived redundant study creation skills to `.claude/skills/archive/` - Kept `core/study-creation-core.md` as canonical ## Housekeeping - Updated `.gitignore` to prevent `nul` and `_dat_run*.dat` 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Create Study Skill - REDIRECT
DEPRECATED: This file has been consolidated.
Use Instead
For study creation, use the core skill:
.claude/skills/core/study-creation-core.md
Why This Changed
Phase 3 of the Agentic Architecture consolidated duplicate skills:
- This file (2207 lines) duplicated content from
core/study-creation-core.md(739 lines) - The core version is more focused and maintainable
- All extractor references now point to
SYS_12_EXTRACTOR_LIBRARY.md
Migration
If you were loading create-study.md, now load:
core/study-creation-core.md- Core study creation logicSYS_12_EXTRACTOR_LIBRARY.md- Extractor reference (single source of truth)
Consolidated: 2025-12-07 | Phase 3: Skill Consolidation