Files
Anto01 a3f18dc377 chore: Project cleanup and Canvas UX improvements (Phase 7-9)
## Cleanup (v0.5.0)
- Delete 102+ orphaned MCP session temp files
- Remove build artifacts (htmlcov, dist, __pycache__)
- Archive superseded plan docs (RALPH_LOOP V2/V3, CANVAS V3, etc.)
- Move debug/analysis scripts from tests/ to tools/analysis/
- Archive redundant NX journals to archive/nx_journals/
- Archive monolithic PROTOCOL.md to docs/archive/
- Update .gitignore with missing patterns
- Clean old study files (optimization_log_old.txt, run_optimization_old.py)

## Canvas UX (Phases 7-9)
- Phase 7: Resizable panels with localStorage persistence
  - Left sidebar: 200-400px, Right panel: 280-600px
  - New useResizablePanel hook and ResizeHandle component
- Phase 8: Enable all palette items
  - All 8 node types now draggable
  - Singleton logic for model/solver/algorithm/surrogate
- Phase 9: Solver configuration
  - Add SolverEngine type (nxnastran, mscnastran, python, etc.)
  - Add NastranSolutionType (SOL101-SOL200)
  - Engine/solution dropdowns in config panel
  - Python script path support

## Documentation
- Update CHANGELOG.md with recent versions
- Update docs/00_INDEX.md
- Create examples/README.md
- Add docs/plans/CANVAS_UX_IMPROVEMENTS.md
2026-01-24 15:17:34 -05:00
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Atomizer Examples

This directory contains example configurations and scripts demonstrating Atomizer capabilities.

Configuration Examples

File Description
optimization_config_neural.json Neural surrogate-accelerated optimization
optimization_config_protocol10.json IMSO (Intelligent Multi-Stage Optimization) example
optimization_config_protocol12.json Custom extractor with Zernike analysis
optimization_config_zernike_mirror.json Telescope mirror WFE optimization

Scripts

File Description
llm_mode_simple_example.py Basic LLM-driven optimization setup
interactive_research_session.py Interactive research mode with visualization

Models

The Models/ directory contains sample FEA models for testing:

  • Bracket geometries
  • Beam structures
  • Mirror assemblies

Zernike Reference

The Zernike_old_reference/ directory contains legacy Zernike extraction code for reference purposes.

Usage

  1. Copy a configuration file to your study directory
  2. Modify paths and parameters for your model
  3. Run optimization with:
cd studies/your_study
python run_optimization.py

Or use the Canvas Builder in the dashboard (http://localhost:3003).

See Also