Antoine 1a14f7c420 fix: v1 boundary handling — inset vertices, 3-point hole keepouts, boundary-aligned triangles, smooth plotting ...

- Triangulation: force inset boundary corner vertices for v1 geometry (Shapely buffer)
- Hole keepouts: 3 evenly-spaced points per circular hole (not dense polyline)
- Boundary layer: seed points derived from inset polygon for proper alignment
- Triangle filtering: full polygon coverage check against inset-valid region
- Plotting: uniform polyline resampling for smooth v1 boundaries, analytic circle rendering
- Verified: 0 bad triangles on both Quicksat sandboxes

2026-02-17 16:24:27 +00:00

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adaptive-isogrid

fix: v1 boundary handling — inset vertices, 3-point hole keepouts, boundary-aligned triangles, smooth plotting

2026-02-17 16:24:27 +00:00

analysis

chore: Project cleanup and Canvas UX improvements (Phase 7-9)

2026-01-24 15:17:34 -05:00

taskboard

Add taskboard CLI tool for kanban orchestration (Phase 1 of plan 13)

2026-02-17 01:39:33 +00:00

analyze_study.py

feat: Add post-optimization tools and mandatory best design archiving

2025-12-12 10:28:35 -05:00

analyze_wfe_annular.bat

feat: Add dashboard chat integration and MCP server

2026-01-13 15:53:55 -05:00

analyze_wfe.bat

feat: Add Study Insights module (SYS_16) for physics visualizations

2025-12-20 13:46:28 -05:00

archive_best_design.py

feat: Add post-optimization tools and mandatory best design archiving

2025-12-12 10:28:35 -05:00

archive_study.bat

feat: Pre-migration checkpoint - updated docs and utilities

2025-12-29 10:22:45 -05:00

atomizer.ico

chore: Add Atomizer launcher and utility scripts

2026-01-20 13:12:12 -05:00

create_desktop_shortcut.ps1

chore: Add Atomizer launcher and utility scripts

2026-01-20 13:12:12 -05:00

create_pareto_graphs.py

feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools

2025-12-23 19:47:37 -05:00

devloop_cli.py

feat: Add DevLoop automation and HTML Reports

2026-01-24 21:18:18 -05:00

extract_all_mirror_data.py

feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools

2025-12-23 19:47:37 -05:00

extract_mirror_optical_specs.py

feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools

2025-12-23 19:47:37 -05:00

find_best_iteration.py

feat: Add post-optimization tools and mandatory best design archiving

2025-12-12 10:28:35 -05:00

generate_optical_report.py

feat: improve optical report with embedded Plotly and 4x PNG export

2026-02-08 19:29:34 -05:00

generate_optical_report.py.backup

docs: Archive stale docs and create Atomizer-HQ agent documentation

2026-02-09 02:48:35 +00:00

generate_psd_figures.py

Add PSD figure generation script for CDR reports

2026-02-06 17:38:48 +00:00

launch_atomizer.bat

chore: Add Atomizer launcher and utility scripts

2026-01-20 13:12:12 -05:00

migrate_studies_to_topics.py

feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools

2025-12-23 19:47:37 -05:00

migrate_to_spec_v2.py

feat(config): AtomizerSpec v2.0 Pydantic models, validators, and tests

2026-01-20 13:12:03 -05:00

test_extraction.py

feat: Add Studio UI, intake system, and extractor improvements

2026-01-27 12:02:30 -05:00

test_j1_vs_mean_per_subcase.py

feat: Add Studio UI, intake system, and extractor improvements

2026-01-27 12:02:30 -05:00

test_zernike_recentering.py

feat: Add Studio UI, intake system, and extractor improvements

2026-01-27 12:02:30 -05:00

wfe_psd.py

Add WFE PSD analysis tools (Tony Hull methodology)

2026-02-06 17:38:34 +00:00

zernike_html_generator_annular.py

fix(tools): make Zernike OPD tools robust to extra subcases

2026-01-29 10:22:33 -05:00

zernike_html_generator.py

fix(tools): make Zernike OPD tools robust to extra subcases

2026-01-29 10:22:33 -05:00