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39a3420a8e333228024c9051101a74643fafffdf
Atomizer/tools
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Antoine 39a3420a8e Fix: skip pockets crossing sandbox boundary 
profile_assembly.py now checks each pocket's polyline against the plate
boundary using Shapely contains(). Pockets extending outside are dropped.
Sandbox 1: 1 pocket removed (was crossing corner near x=150, y=-20).
2026-02-17 11:41:48 +00:00
..
adaptive-isogrid
Fix: skip pockets crossing sandbox boundary
2026-02-17 11:41:48 +00:00
analysis
chore: Project cleanup and Canvas UX improvements (Phase 7-9)
2026-01-24 15:17:34 -05:00
taskboard
Add taskboard CLI tool for kanban orchestration (Phase 1 of plan 13)
2026-02-17 01:39:33 +00:00
analyze_study.py
feat: Add post-optimization tools and mandatory best design archiving
2025-12-12 10:28:35 -05:00
analyze_wfe_annular.bat
feat: Add dashboard chat integration and MCP server
2026-01-13 15:53:55 -05:00
analyze_wfe.bat
feat: Add Study Insights module (SYS_16) for physics visualizations
2025-12-20 13:46:28 -05:00
archive_best_design.py
feat: Add post-optimization tools and mandatory best design archiving
2025-12-12 10:28:35 -05:00
archive_study.bat
feat: Pre-migration checkpoint - updated docs and utilities
2025-12-29 10:22:45 -05:00
atomizer.ico
chore: Add Atomizer launcher and utility scripts
2026-01-20 13:12:12 -05:00
create_desktop_shortcut.ps1
chore: Add Atomizer launcher and utility scripts
2026-01-20 13:12:12 -05:00
create_pareto_graphs.py
feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools
2025-12-23 19:47:37 -05:00
devloop_cli.py
feat: Add DevLoop automation and HTML Reports
2026-01-24 21:18:18 -05:00
extract_all_mirror_data.py
feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools
2025-12-23 19:47:37 -05:00
extract_mirror_optical_specs.py
feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools
2025-12-23 19:47:37 -05:00
find_best_iteration.py
feat: Add post-optimization tools and mandatory best design archiving
2025-12-12 10:28:35 -05:00
generate_optical_report.py
feat: improve optical report with embedded Plotly and 4x PNG export
2026-02-08 19:29:34 -05:00
generate_optical_report.py.backup
docs: Archive stale docs and create Atomizer-HQ agent documentation
2026-02-09 02:48:35 +00:00
generate_psd_figures.py
Add PSD figure generation script for CDR reports
2026-02-06 17:38:48 +00:00
launch_atomizer.bat
chore: Add Atomizer launcher and utility scripts
2026-01-20 13:12:12 -05:00
migrate_studies_to_topics.py
feat: Major update - Physics docs, Zernike OPD, insights, NX journals, tools
2025-12-23 19:47:37 -05:00
migrate_to_spec_v2.py
feat(config): AtomizerSpec v2.0 Pydantic models, validators, and tests
2026-01-20 13:12:03 -05:00
test_extraction.py
feat: Add Studio UI, intake system, and extractor improvements
2026-01-27 12:02:30 -05:00
test_j1_vs_mean_per_subcase.py
feat: Add Studio UI, intake system, and extractor improvements
2026-01-27 12:02:30 -05:00
test_zernike_recentering.py
feat: Add Studio UI, intake system, and extractor improvements
2026-01-27 12:02:30 -05:00
wfe_psd.py
Add WFE PSD analysis tools (Tony Hull methodology)
2026-02-06 17:38:34 +00:00
zernike_html_generator_annular.py
fix(tools): make Zernike OPD tools robust to extra subcases
2026-01-29 10:22:33 -05:00
zernike_html_generator.py
fix(tools): make Zernike OPD tools robust to extra subcases
2026-01-29 10:22:33 -05:00