- Add TrialManager (trial_manager.py) for consistent trial_NNNN naming - Add DashboardDB (dashboard_db.py) for Optuna-compatible database schema - Update CLAUDE.md with trial management documentation - Update ATOMIZER_CONTEXT.md with v1.8 trial system - Update cheatsheet v2.2 with new utilities - Update SYS_14 protocol to v2.3 with TrialManager integration - Add LAC learnings for trial management patterns - Add archive/README.md for deprecated code policy Key principles: - Trial numbers NEVER reset (monotonic) - Folders NEVER get overwritten - Database always synced with filesystem - Surrogate predictions are NOT trials (only FEA results) 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Atomizer Archive
This directory contains deprecated/replaced code that is kept for reference and potential rollback.
Structure
archive/
├── extractors/ # Deprecated physics extractors
│ └── zernike_legacy/ # Pre-OPD Zernike extractors
└── README.md
Archive Policy
When replacing functionality:
- Move the old file to the appropriate archive subdirectory
- Add a header comment noting the archive date and replacement
- Update this README with the change
Archived Items
extractors/zernike_legacy/ (2024-12-28)
Replaced by: extract_zernike_opd.py (ZernikeOPDExtractor)
Reason: The OPD method provides more accurate wavefront error calculations by:
- Using optical path difference (OPD) directly instead of surface displacement
- Proper handling of relative subcase comparisons
- Better numerical stability for high-order Zernike modes
Archived files:
| File | Original Class | Description |
|---|---|---|
extract_zernike.py |
ZernikeExtractor |
Original displacement-based Zernike |
extract_zernike_surface.py |
ZernikeSurfaceExtractor |
Surface-normal projection variant |
extract_zernike_figure.py |
ZernikeFigureExtractor |
Figure error variant |
To restore: Copy files back to optimization_engine/extractors/ and update __init__.py