Files
ATOCore/tests/test_backup.py

401 lines
15 KiB
Python
Raw Normal View History

ops: add restore_runtime_backup + drill runbook Close the backup side of the loop: we had create/list/validate but no restore, and no documented drill. A backup you've never restored is not a backup. This lands the missing restore surface and the procedure to exercise it before enabling any write-path automation (auto-capture, automated ingestion, reinforcement sweeps). Code — src/atocore/ops/backup.py: - restore_runtime_backup(stamp, *, include_chroma, pre_restore_snapshot, confirm_service_stopped) performs: 1. validate_backup() gate — refuse on any error 2. pre-restore safety snapshot of current state (reversibility anchor) 3. PRAGMA wal_checkpoint(TRUNCATE) on target db (flush + release OS handles; Windows needs this after conn.backup() reads) 4. unlink stale -wal/-shm sidecars (tolerant to Windows lock races) 5. shutil.copy2 snapshot db over target 6. restore registry if snapshot captured one 7. restore Chroma tree if snapshot captured one and include_chroma resolves to true (defaults to whether backup has Chroma) 8. PRAGMA integrity_check on restored db, report result - Refuses without confirm_service_stopped=True to prevent hot-restore into a running service (would corrupt SQLite state) - Rewrote main() as argparse with 4 subcommands: create, list, validate, restore. `python -m atocore.ops.backup restore STAMP --confirm-service-stopped` is the drill CLI entry point, run via `docker compose run --rm --entrypoint python atocore` so it reuses the live service's volume mounts Tests — tests/test_backup.py (6 new): - test_restore_refuses_without_confirm_service_stopped - test_restore_raises_on_invalid_backup - test_restore_round_trip_reverses_post_backup_mutations (canonical drill flow: seed -> backup -> mutate -> restore -> mutation gone + baseline survived + pre-restore snapshot has the mutation captured as rollback anchor) - test_restore_round_trip_with_chroma - test_restore_skips_pre_snapshot_when_requested - test_restore_cleans_stale_wal_sidecars (asserts stale byte markers do not survive, not file existence, since PRAGMA integrity_check may legitimately recreate -wal) Docs — docs/backup-restore-drill.md (new): - What gets backed up (hot sqlite, cold chroma, registry JSON, metadata.json) and what doesn't (.env, source content) - What restore does, step by step, and why confirm_service_stopped is a hard gate - 8-step drill procedure: capture -> baseline -> mutate -> stop -> restore -> start -> verify marker gone -> optional cleanup - Correct endpoint bodies verified against routes.py: POST /admin/backup with JSON body {"include_chroma": true} POST /memory with memory_type/content/project/confidence GET /memory?project=drill to list drill markers POST /query with {"prompt": ..., "top_k": ...} (not "query") - Failure modes: integrity_check fail, container won't start, marker still present after restore, with remediation for each - When to run: before new write-path automation, after backup.py or schema changes, after infra bumps, monthly as standing check 225/225 tests passing (219 existing + 6 new restore). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-08 21:17:48 -04:00
"""Tests for runtime backup creation and restore."""
import json
import sqlite3
from datetime import UTC, datetime
ops: add restore_runtime_backup + drill runbook Close the backup side of the loop: we had create/list/validate but no restore, and no documented drill. A backup you've never restored is not a backup. This lands the missing restore surface and the procedure to exercise it before enabling any write-path automation (auto-capture, automated ingestion, reinforcement sweeps). Code — src/atocore/ops/backup.py: - restore_runtime_backup(stamp, *, include_chroma, pre_restore_snapshot, confirm_service_stopped) performs: 1. validate_backup() gate — refuse on any error 2. pre-restore safety snapshot of current state (reversibility anchor) 3. PRAGMA wal_checkpoint(TRUNCATE) on target db (flush + release OS handles; Windows needs this after conn.backup() reads) 4. unlink stale -wal/-shm sidecars (tolerant to Windows lock races) 5. shutil.copy2 snapshot db over target 6. restore registry if snapshot captured one 7. restore Chroma tree if snapshot captured one and include_chroma resolves to true (defaults to whether backup has Chroma) 8. PRAGMA integrity_check on restored db, report result - Refuses without confirm_service_stopped=True to prevent hot-restore into a running service (would corrupt SQLite state) - Rewrote main() as argparse with 4 subcommands: create, list, validate, restore. `python -m atocore.ops.backup restore STAMP --confirm-service-stopped` is the drill CLI entry point, run via `docker compose run --rm --entrypoint python atocore` so it reuses the live service's volume mounts Tests — tests/test_backup.py (6 new): - test_restore_refuses_without_confirm_service_stopped - test_restore_raises_on_invalid_backup - test_restore_round_trip_reverses_post_backup_mutations (canonical drill flow: seed -> backup -> mutate -> restore -> mutation gone + baseline survived + pre-restore snapshot has the mutation captured as rollback anchor) - test_restore_round_trip_with_chroma - test_restore_skips_pre_snapshot_when_requested - test_restore_cleans_stale_wal_sidecars (asserts stale byte markers do not survive, not file existence, since PRAGMA integrity_check may legitimately recreate -wal) Docs — docs/backup-restore-drill.md (new): - What gets backed up (hot sqlite, cold chroma, registry JSON, metadata.json) and what doesn't (.env, source content) - What restore does, step by step, and why confirm_service_stopped is a hard gate - 8-step drill procedure: capture -> baseline -> mutate -> stop -> restore -> start -> verify marker gone -> optional cleanup - Correct endpoint bodies verified against routes.py: POST /admin/backup with JSON body {"include_chroma": true} POST /memory with memory_type/content/project/confidence GET /memory?project=drill to list drill markers POST /query with {"prompt": ..., "top_k": ...} (not "query") - Failure modes: integrity_check fail, container won't start, marker still present after restore, with remediation for each - When to run: before new write-path automation, after backup.py or schema changes, after infra bumps, monthly as standing check 225/225 tests passing (219 existing + 6 new restore). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-08 21:17:48 -04:00
import pytest
import atocore.config as config
from atocore.models.database import init_db
feat: tunable ranking, refresh status, chroma backup + admin endpoints Three small improvements that move the operational baseline forward without changing the existing trust model. 1. Tunable retrieval ranking weights - rank_project_match_boost, rank_query_token_step, rank_query_token_cap, rank_path_high_signal_boost, rank_path_low_signal_penalty are now Settings fields - all overridable via ATOCORE_* env vars - retriever no longer hard-codes 2.0 / 1.18 / 0.72 / 0.08 / 1.32 - lets ranking be tuned per environment as Wave 1 is exercised without code changes 2. /projects/{name}/refresh status - refresh_registered_project now returns an overall status field ("ingested", "partial", "nothing_to_ingest") plus roots_ingested and roots_skipped counters - ProjectRefreshResponse advertises the new fields so callers can rely on them - covers the case where every configured root is missing on disk 3. Chroma cold snapshot + admin backup endpoints - create_runtime_backup now accepts include_chroma and writes a cold directory copy of the chroma persistence path - new list_runtime_backups() and validate_backup() helpers - new endpoints: - POST /admin/backup create snapshot (optional chroma) - GET /admin/backup list snapshots - GET /admin/backup/{stamp}/validate structural validation - chroma snapshots are taken under exclusive_ingestion() so a refresh or ingest cannot race with the cold copy - backup metadata records what was actually included and how big Tests: - 8 new tests covering tunable weights, refresh status branches (ingested / partial / nothing_to_ingest), chroma snapshot, list, validate, and the API endpoints (including the lock-acquisition path) - existing fake refresh stubs in test_api_storage.py updated for the expanded ProjectRefreshResponse model - full suite: 105 passing (was 97) next-steps doc updated to reflect that the chroma snapshot + restore validation gap from current-state.md is now closed in code; only the operational retention policy remains.
2026-04-06 18:42:19 -04:00
from atocore.ops.backup import (
create_runtime_backup,
list_runtime_backups,
ops: add restore_runtime_backup + drill runbook Close the backup side of the loop: we had create/list/validate but no restore, and no documented drill. A backup you've never restored is not a backup. This lands the missing restore surface and the procedure to exercise it before enabling any write-path automation (auto-capture, automated ingestion, reinforcement sweeps). Code — src/atocore/ops/backup.py: - restore_runtime_backup(stamp, *, include_chroma, pre_restore_snapshot, confirm_service_stopped) performs: 1. validate_backup() gate — refuse on any error 2. pre-restore safety snapshot of current state (reversibility anchor) 3. PRAGMA wal_checkpoint(TRUNCATE) on target db (flush + release OS handles; Windows needs this after conn.backup() reads) 4. unlink stale -wal/-shm sidecars (tolerant to Windows lock races) 5. shutil.copy2 snapshot db over target 6. restore registry if snapshot captured one 7. restore Chroma tree if snapshot captured one and include_chroma resolves to true (defaults to whether backup has Chroma) 8. PRAGMA integrity_check on restored db, report result - Refuses without confirm_service_stopped=True to prevent hot-restore into a running service (would corrupt SQLite state) - Rewrote main() as argparse with 4 subcommands: create, list, validate, restore. `python -m atocore.ops.backup restore STAMP --confirm-service-stopped` is the drill CLI entry point, run via `docker compose run --rm --entrypoint python atocore` so it reuses the live service's volume mounts Tests — tests/test_backup.py (6 new): - test_restore_refuses_without_confirm_service_stopped - test_restore_raises_on_invalid_backup - test_restore_round_trip_reverses_post_backup_mutations (canonical drill flow: seed -> backup -> mutate -> restore -> mutation gone + baseline survived + pre-restore snapshot has the mutation captured as rollback anchor) - test_restore_round_trip_with_chroma - test_restore_skips_pre_snapshot_when_requested - test_restore_cleans_stale_wal_sidecars (asserts stale byte markers do not survive, not file existence, since PRAGMA integrity_check may legitimately recreate -wal) Docs — docs/backup-restore-drill.md (new): - What gets backed up (hot sqlite, cold chroma, registry JSON, metadata.json) and what doesn't (.env, source content) - What restore does, step by step, and why confirm_service_stopped is a hard gate - 8-step drill procedure: capture -> baseline -> mutate -> stop -> restore -> start -> verify marker gone -> optional cleanup - Correct endpoint bodies verified against routes.py: POST /admin/backup with JSON body {"include_chroma": true} POST /memory with memory_type/content/project/confidence GET /memory?project=drill to list drill markers POST /query with {"prompt": ..., "top_k": ...} (not "query") - Failure modes: integrity_check fail, container won't start, marker still present after restore, with remediation for each - When to run: before new write-path automation, after backup.py or schema changes, after infra bumps, monthly as standing check 225/225 tests passing (219 existing + 6 new restore). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-08 21:17:48 -04:00
restore_runtime_backup,
feat: tunable ranking, refresh status, chroma backup + admin endpoints Three small improvements that move the operational baseline forward without changing the existing trust model. 1. Tunable retrieval ranking weights - rank_project_match_boost, rank_query_token_step, rank_query_token_cap, rank_path_high_signal_boost, rank_path_low_signal_penalty are now Settings fields - all overridable via ATOCORE_* env vars - retriever no longer hard-codes 2.0 / 1.18 / 0.72 / 0.08 / 1.32 - lets ranking be tuned per environment as Wave 1 is exercised without code changes 2. /projects/{name}/refresh status - refresh_registered_project now returns an overall status field ("ingested", "partial", "nothing_to_ingest") plus roots_ingested and roots_skipped counters - ProjectRefreshResponse advertises the new fields so callers can rely on them - covers the case where every configured root is missing on disk 3. Chroma cold snapshot + admin backup endpoints - create_runtime_backup now accepts include_chroma and writes a cold directory copy of the chroma persistence path - new list_runtime_backups() and validate_backup() helpers - new endpoints: - POST /admin/backup create snapshot (optional chroma) - GET /admin/backup list snapshots - GET /admin/backup/{stamp}/validate structural validation - chroma snapshots are taken under exclusive_ingestion() so a refresh or ingest cannot race with the cold copy - backup metadata records what was actually included and how big Tests: - 8 new tests covering tunable weights, refresh status branches (ingested / partial / nothing_to_ingest), chroma snapshot, list, validate, and the API endpoints (including the lock-acquisition path) - existing fake refresh stubs in test_api_storage.py updated for the expanded ProjectRefreshResponse model - full suite: 105 passing (was 97) next-steps doc updated to reflect that the chroma snapshot + restore validation gap from current-state.md is now closed in code; only the operational retention policy remains.
2026-04-06 18:42:19 -04:00
validate_backup,
)
def test_create_runtime_backup_copies_db_and_registry(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
registry_path = tmp_path / "config" / "project-registry.json"
registry_path.parent.mkdir(parents=True)
registry_path.write_text('{"projects":[{"id":"p01-example","aliases":[],"ingest_roots":[{"source":"vault","subpath":"incoming/projects/p01-example"}]}]}\n', encoding="utf-8")
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
with sqlite3.connect(str(config.settings.db_path)) as conn:
conn.execute("INSERT INTO projects (id, name) VALUES (?, ?)", ("p01", "P01 Example"))
conn.commit()
result = create_runtime_backup(datetime(2026, 4, 6, 18, 0, 0, tzinfo=UTC))
finally:
config.settings = original_settings
db_snapshot = tmp_path / "backups" / "snapshots" / "20260406T180000Z" / "db" / "atocore.db"
registry_snapshot = (
tmp_path / "backups" / "snapshots" / "20260406T180000Z" / "config" / "project-registry.json"
)
metadata_path = (
tmp_path / "backups" / "snapshots" / "20260406T180000Z" / "backup-metadata.json"
)
assert result["db_snapshot_path"] == str(db_snapshot)
assert db_snapshot.exists()
assert registry_snapshot.exists()
assert metadata_path.exists()
with sqlite3.connect(str(db_snapshot)) as conn:
row = conn.execute("SELECT name FROM projects WHERE id = ?", ("p01",)).fetchone()
assert row[0] == "P01 Example"
metadata = json.loads(metadata_path.read_text(encoding="utf-8"))
assert metadata["registry_snapshot_path"] == str(registry_snapshot)
feat: tunable ranking, refresh status, chroma backup + admin endpoints Three small improvements that move the operational baseline forward without changing the existing trust model. 1. Tunable retrieval ranking weights - rank_project_match_boost, rank_query_token_step, rank_query_token_cap, rank_path_high_signal_boost, rank_path_low_signal_penalty are now Settings fields - all overridable via ATOCORE_* env vars - retriever no longer hard-codes 2.0 / 1.18 / 0.72 / 0.08 / 1.32 - lets ranking be tuned per environment as Wave 1 is exercised without code changes 2. /projects/{name}/refresh status - refresh_registered_project now returns an overall status field ("ingested", "partial", "nothing_to_ingest") plus roots_ingested and roots_skipped counters - ProjectRefreshResponse advertises the new fields so callers can rely on them - covers the case where every configured root is missing on disk 3. Chroma cold snapshot + admin backup endpoints - create_runtime_backup now accepts include_chroma and writes a cold directory copy of the chroma persistence path - new list_runtime_backups() and validate_backup() helpers - new endpoints: - POST /admin/backup create snapshot (optional chroma) - GET /admin/backup list snapshots - GET /admin/backup/{stamp}/validate structural validation - chroma snapshots are taken under exclusive_ingestion() so a refresh or ingest cannot race with the cold copy - backup metadata records what was actually included and how big Tests: - 8 new tests covering tunable weights, refresh status branches (ingested / partial / nothing_to_ingest), chroma snapshot, list, validate, and the API endpoints (including the lock-acquisition path) - existing fake refresh stubs in test_api_storage.py updated for the expanded ProjectRefreshResponse model - full suite: 105 passing (was 97) next-steps doc updated to reflect that the chroma snapshot + restore validation gap from current-state.md is now closed in code; only the operational retention policy remains.
2026-04-06 18:42:19 -04:00
def test_create_runtime_backup_includes_chroma_when_requested(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
# Create a fake chroma directory tree with a couple of files.
chroma_dir = config.settings.chroma_path
(chroma_dir / "collection-a").mkdir(parents=True, exist_ok=True)
(chroma_dir / "collection-a" / "data.bin").write_bytes(b"\x00\x01\x02\x03")
(chroma_dir / "metadata.json").write_text('{"ok":true}', encoding="utf-8")
result = create_runtime_backup(
datetime(2026, 4, 6, 20, 0, 0, tzinfo=UTC),
include_chroma=True,
)
finally:
config.settings = original_settings
chroma_snapshot_root = (
tmp_path / "backups" / "snapshots" / "20260406T200000Z" / "chroma"
)
assert result["chroma_snapshot_included"] is True
assert result["chroma_snapshot_path"] == str(chroma_snapshot_root)
assert result["chroma_snapshot_files"] >= 2
assert result["chroma_snapshot_bytes"] > 0
assert (chroma_snapshot_root / "collection-a" / "data.bin").exists()
assert (chroma_snapshot_root / "metadata.json").exists()
def test_list_and_validate_runtime_backups(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
first = create_runtime_backup(datetime(2026, 4, 6, 21, 0, 0, tzinfo=UTC))
second = create_runtime_backup(datetime(2026, 4, 6, 22, 0, 0, tzinfo=UTC))
listing = list_runtime_backups()
first_validation = validate_backup("20260406T210000Z")
second_validation = validate_backup("20260406T220000Z")
missing_validation = validate_backup("20260101T000000Z")
finally:
config.settings = original_settings
assert len(listing) == 2
assert {entry["stamp"] for entry in listing} == {
"20260406T210000Z",
"20260406T220000Z",
}
for entry in listing:
assert entry["has_metadata"] is True
assert entry["metadata"]["db_snapshot_path"]
assert first_validation["valid"] is True
assert first_validation["db_ok"] is True
assert first_validation["errors"] == []
assert second_validation["valid"] is True
assert missing_validation["exists"] is False
assert "snapshot_directory_missing" in missing_validation["errors"]
# both metadata paths are reachable on disk
assert json.loads(
(tmp_path / "backups" / "snapshots" / "20260406T210000Z" / "backup-metadata.json")
.read_text(encoding="utf-8")
)["db_snapshot_path"] == first["db_snapshot_path"]
assert second["db_snapshot_path"].endswith("atocore.db")
def test_create_runtime_backup_handles_missing_registry(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
result = create_runtime_backup(datetime(2026, 4, 6, 19, 0, 0, tzinfo=UTC))
finally:
config.settings = original_settings
assert result["registry_snapshot_path"] == ""
ops: add restore_runtime_backup + drill runbook Close the backup side of the loop: we had create/list/validate but no restore, and no documented drill. A backup you've never restored is not a backup. This lands the missing restore surface and the procedure to exercise it before enabling any write-path automation (auto-capture, automated ingestion, reinforcement sweeps). Code — src/atocore/ops/backup.py: - restore_runtime_backup(stamp, *, include_chroma, pre_restore_snapshot, confirm_service_stopped) performs: 1. validate_backup() gate — refuse on any error 2. pre-restore safety snapshot of current state (reversibility anchor) 3. PRAGMA wal_checkpoint(TRUNCATE) on target db (flush + release OS handles; Windows needs this after conn.backup() reads) 4. unlink stale -wal/-shm sidecars (tolerant to Windows lock races) 5. shutil.copy2 snapshot db over target 6. restore registry if snapshot captured one 7. restore Chroma tree if snapshot captured one and include_chroma resolves to true (defaults to whether backup has Chroma) 8. PRAGMA integrity_check on restored db, report result - Refuses without confirm_service_stopped=True to prevent hot-restore into a running service (would corrupt SQLite state) - Rewrote main() as argparse with 4 subcommands: create, list, validate, restore. `python -m atocore.ops.backup restore STAMP --confirm-service-stopped` is the drill CLI entry point, run via `docker compose run --rm --entrypoint python atocore` so it reuses the live service's volume mounts Tests — tests/test_backup.py (6 new): - test_restore_refuses_without_confirm_service_stopped - test_restore_raises_on_invalid_backup - test_restore_round_trip_reverses_post_backup_mutations (canonical drill flow: seed -> backup -> mutate -> restore -> mutation gone + baseline survived + pre-restore snapshot has the mutation captured as rollback anchor) - test_restore_round_trip_with_chroma - test_restore_skips_pre_snapshot_when_requested - test_restore_cleans_stale_wal_sidecars (asserts stale byte markers do not survive, not file existence, since PRAGMA integrity_check may legitimately recreate -wal) Docs — docs/backup-restore-drill.md (new): - What gets backed up (hot sqlite, cold chroma, registry JSON, metadata.json) and what doesn't (.env, source content) - What restore does, step by step, and why confirm_service_stopped is a hard gate - 8-step drill procedure: capture -> baseline -> mutate -> stop -> restore -> start -> verify marker gone -> optional cleanup - Correct endpoint bodies verified against routes.py: POST /admin/backup with JSON body {"include_chroma": true} POST /memory with memory_type/content/project/confidence GET /memory?project=drill to list drill markers POST /query with {"prompt": ..., "top_k": ...} (not "query") - Failure modes: integrity_check fail, container won't start, marker still present after restore, with remediation for each - When to run: before new write-path automation, after backup.py or schema changes, after infra bumps, monthly as standing check 225/225 tests passing (219 existing + 6 new restore). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-08 21:17:48 -04:00
def test_restore_refuses_without_confirm_service_stopped(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
create_runtime_backup(datetime(2026, 4, 9, 10, 0, 0, tzinfo=UTC))
with pytest.raises(RuntimeError, match="confirm_service_stopped"):
restore_runtime_backup("20260409T100000Z")
finally:
config.settings = original_settings
def test_restore_raises_on_invalid_backup(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
with pytest.raises(RuntimeError, match="failed validation"):
restore_runtime_backup(
"20250101T000000Z", confirm_service_stopped=True
)
finally:
config.settings = original_settings
def test_restore_round_trip_reverses_post_backup_mutations(tmp_path, monkeypatch):
"""Canonical drill: snapshot -> mutate -> restore -> mutation gone."""
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
registry_path = tmp_path / "config" / "project-registry.json"
registry_path.parent.mkdir(parents=True)
registry_path.write_text(
'{"projects":[{"id":"p01-example","aliases":[],'
'"ingest_roots":[{"source":"vault","subpath":"incoming/projects/p01-example"}]}]}\n',
encoding="utf-8",
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
# 1. Seed baseline state that should SURVIVE the restore.
with sqlite3.connect(str(config.settings.db_path)) as conn:
conn.execute(
"INSERT INTO projects (id, name) VALUES (?, ?)",
("p01", "Baseline Project"),
)
conn.commit()
# 2. Create the backup we're going to restore to.
create_runtime_backup(datetime(2026, 4, 9, 11, 0, 0, tzinfo=UTC))
stamp = "20260409T110000Z"
# 3. Mutate live state AFTER the backup — this is what the
# restore should reverse.
with sqlite3.connect(str(config.settings.db_path)) as conn:
conn.execute(
"INSERT INTO projects (id, name) VALUES (?, ?)",
("p99", "Post Backup Mutation"),
)
conn.commit()
# Confirm the mutation is present before restore.
with sqlite3.connect(str(config.settings.db_path)) as conn:
row = conn.execute(
"SELECT name FROM projects WHERE id = ?", ("p99",)
).fetchone()
assert row is not None and row[0] == "Post Backup Mutation"
# 4. Restore — the drill procedure. Explicit confirm_service_stopped.
result = restore_runtime_backup(
stamp, confirm_service_stopped=True
)
# 5. Verify restore report
assert result["stamp"] == stamp
assert result["db_restored"] is True
assert result["registry_restored"] is True
assert result["restored_integrity_ok"] is True
assert result["pre_restore_snapshot"] is not None
# 6. Verify live state reflects the restore: baseline survived,
# post-backup mutation is gone.
with sqlite3.connect(str(config.settings.db_path)) as conn:
baseline = conn.execute(
"SELECT name FROM projects WHERE id = ?", ("p01",)
).fetchone()
mutation = conn.execute(
"SELECT name FROM projects WHERE id = ?", ("p99",)
).fetchone()
assert baseline is not None and baseline[0] == "Baseline Project"
assert mutation is None
# 7. Pre-restore safety snapshot DOES contain the mutation —
# it captured current state before overwriting. This is the
# reversibility guarantee: the operator can restore back to
# it if the restore itself was a mistake.
pre_stamp = result["pre_restore_snapshot"]
pre_validation = validate_backup(pre_stamp)
assert pre_validation["valid"] is True
pre_db_path = pre_validation["metadata"]["db_snapshot_path"]
with sqlite3.connect(pre_db_path) as conn:
pre_mutation = conn.execute(
"SELECT name FROM projects WHERE id = ?", ("p99",)
).fetchone()
assert pre_mutation is not None and pre_mutation[0] == "Post Backup Mutation"
finally:
config.settings = original_settings
def test_restore_round_trip_with_chroma(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
# Seed baseline chroma state that should survive restore.
chroma_dir = config.settings.chroma_path
(chroma_dir / "coll-a").mkdir(parents=True, exist_ok=True)
(chroma_dir / "coll-a" / "baseline.bin").write_bytes(b"baseline")
create_runtime_backup(
datetime(2026, 4, 9, 12, 0, 0, tzinfo=UTC), include_chroma=True
)
stamp = "20260409T120000Z"
# Mutate chroma after backup: add a file + remove baseline.
(chroma_dir / "coll-a" / "post_backup.bin").write_bytes(b"post")
(chroma_dir / "coll-a" / "baseline.bin").unlink()
result = restore_runtime_backup(
stamp, confirm_service_stopped=True
)
assert result["chroma_restored"] is True
assert (chroma_dir / "coll-a" / "baseline.bin").exists()
assert not (chroma_dir / "coll-a" / "post_backup.bin").exists()
finally:
config.settings = original_settings
def test_restore_skips_pre_snapshot_when_requested(tmp_path, monkeypatch):
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
create_runtime_backup(datetime(2026, 4, 9, 13, 0, 0, tzinfo=UTC))
before_count = len(list_runtime_backups())
result = restore_runtime_backup(
"20260409T130000Z",
confirm_service_stopped=True,
pre_restore_snapshot=False,
)
after_count = len(list_runtime_backups())
assert result["pre_restore_snapshot"] is None
assert after_count == before_count
finally:
config.settings = original_settings
def test_restore_cleans_stale_wal_sidecars(tmp_path, monkeypatch):
"""Stale WAL/SHM sidecars must not carry bytes past the restore.
Note: after restore runs, PRAGMA integrity_check reopens the
restored db which may legitimately recreate a fresh -wal. So we
assert that the STALE byte marker no longer appears in either
sidecar, not that the files are absent.
"""
monkeypatch.setenv("ATOCORE_DATA_DIR", str(tmp_path / "data"))
monkeypatch.setenv("ATOCORE_BACKUP_DIR", str(tmp_path / "backups"))
monkeypatch.setenv(
"ATOCORE_PROJECT_REGISTRY_PATH", str(tmp_path / "config" / "project-registry.json")
)
original_settings = config.settings
try:
config.settings = config.Settings()
init_db()
create_runtime_backup(datetime(2026, 4, 9, 14, 0, 0, tzinfo=UTC))
# Write fake stale WAL/SHM next to the live db with an
# unmistakable marker.
target_db = config.settings.db_path
wal = target_db.with_name(target_db.name + "-wal")
shm = target_db.with_name(target_db.name + "-shm")
stale_marker = b"STALE-SIDECAR-MARKER-DO-NOT-SURVIVE"
wal.write_bytes(stale_marker)
shm.write_bytes(stale_marker)
assert wal.exists() and shm.exists()
restore_runtime_backup(
"20260409T140000Z", confirm_service_stopped=True
)
# The restored db must pass integrity check (tested elsewhere);
# here we just confirm that no file next to it still contains
# the stale marker from the old live process.
for sidecar in (wal, shm):
if sidecar.exists():
assert stale_marker not in sidecar.read_bytes(), (
f"{sidecar.name} still carries stale marker"
)
finally:
config.settings = original_settings