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feat: Implement Study Organization System (Organization v2.0)

Browse Source 
Reorganized simple_beam_optimization study and created templates for future
studies following best practices for clarity, chronology, and self-documentation.

## Study Reorganization (simple_beam_optimization)

**New Directory Structure**:
```
studies/simple_beam_optimization/
├── 1_setup/                    # Pre-optimization setup
│   ├── model/                  # Reference CAD/FEM model
│   └── benchmarking/           # Baseline validation results
├── 2_substudies/               # Optimization runs (numbered chronologically)
│   ├── 01_initial_exploration/
│   ├── 02_validation_3d_3trials/
│   ├── 03_validation_4d_3trials/
│   └── 04_full_optimization_50trials/
└── 3_reports/                  # Study-level analysis
    └── COMPREHENSIVE_BENCHMARK_RESULTS.md
```

**Key Changes**:
1. **Numbered Substudies**: 01_, 02_, 03_, 04_ indicate chronological order
2. **Reorganized Setup**: model/ and benchmarking/ moved to 1_setup/
3. **Centralized Reports**: Study-level docs moved to 3_reports/
4. **Substudy Documentation**: Each substudy has README.md explaining purpose/results

## Updated Metadata

**study_metadata.json** (v2.0):
- Tracks all 4 substudies with creation date, status, purpose
- Includes result summaries (best objective, feasible count)
- Documents new organization version

**Substudies Documented**:
- 01_initial_exploration - Initial design space exploration
- 02_validation_3d_3trials - Validate 3D parameter updates
- 03_validation_4d_3trials - Validate 4D updates including hole_count
- 04_full_optimization_50trials - Full 50-trial optimization

## Templates for Future Studies

**templates/study_template/** - Complete study structure:
- README.md template with study overview format
- study_metadata.json template with v2.0 schema
- Pre-created 1_setup/, 2_substudies/, 3_reports/ directories

**templates/substudy_README_template.md** - Standardized substudy documentation:
- Purpose and hypothesis
- Configuration changes from previous run
- Expected vs actual results
- Validation checklist
- Lessons learned
- Next steps

**templates/HOW_TO_CREATE_A_STUDY.md** - Complete guide:
- Quick start (9 steps from template to first run)
- Substudy workflow
- Directory structure reference
- Naming conventions
- Best practices
- Troubleshooting guide
- Examples

## Benefits

**Clarity**:
- Numbered substudies show chronological progression (01 → 02 → 03 → 04)
- Clear separation: setup vs. optimization runs vs. analysis
- Self-documenting via substudy READMEs

**Discoverability**:
- study_metadata.json provides complete substudy registry
- Each substudy README explains what was tested and why
- Easy to find results for specific runs

**Scalability**:
- Works for small studies (3 substudies) or large studies (50+)
- Chronological numbering scales to 99 substudies
- Template system makes new studies quick to set up

**Reproducibility**:
- Each substudy documents configuration changes
- Purpose and results clearly stated
- Lessons learned captured for future reference

## Implementation Details

**reorganize_study.py** - Migration script:
- Handles locked files gracefully
- Moves files to new structure
- Provides clear progress reporting
- Safe to run multiple times

**Organization Version**: 2.0
- Tracked in study_metadata.json
- Future studies will use this structure by default
- Existing studies can migrate or keep current structure

## Files Added

- templates/study_template/ - Complete study template
- templates/substudy_README_template.md - Substudy documentation template
- templates/HOW_TO_CREATE_A_STUDY.md - Comprehensive creation guide
- reorganize_study.py - Migration script for existing studies

## Files Reorganized (simple_beam_optimization)

**Moved to 1_setup/**:
- model/ → 1_setup/model/ (CAD/FEM reference files)
- substudies/benchmarking/ → 1_setup/benchmarking/
- baseline_validation.json → 1_setup/

**Renamed and Moved to 2_substudies/**:
- substudies/initial_exploration/ → 2_substudies/01_initial_exploration/
- substudies/validation_3trials/ → 2_substudies/02_validation_3d_3trials/
- substudies/validation_4d_3trials/ → 2_substudies/03_validation_4d_3trials/
- substudies/full_optimization_50trials/ → 2_substudies/04_full_optimization_50trials/

**Moved to 3_reports/**:
- COMPREHENSIVE_BENCHMARK_RESULTS.md → 3_reports/

**Substudy-Specific Docs** (moved to substudy directories):
- OPTIMIZATION_RESULTS_50TRIALS.md → 2_substudies/04_full_optimization_50trials/OPTIMIZATION_RESULTS.md

## Documentation Created

Each substudy now has README.md documenting:
- **01_initial_exploration**: Initial exploration purpose
- **02_validation_3d_3trials**: 3D parameter update validation
- **03_validation_4d_3trials**: hole_count validation success
- **04_full_optimization_50trials**: Full results, no feasible designs found

## Next Steps

**For Future Studies**:
1. Copy templates/study_template/
2. Follow templates/HOW_TO_CREATE_A_STUDY.md
3. Use numbered substudies (01_, 02_, ...)
4. Document each substudy with README.md

**For Existing Studies**:
- Can migrate using reorganize_study.py
- Or apply organization v2.0 to new substudies only
- See docs/STUDY_ORGANIZATION.md for migration guide

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
This commit is contained in:
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2025-11-17 19:20:45 -05:00
parent 91e2d7a120
commit fe2ef9be6d
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# Benchmarking Report
**Study**: simple_beam_optimization
**Date**: 2025-11-17T11:18:28.329069
**Validation**: ✅ PASSED
## Model Introspection
**Expressions Found**: 30
| Expression | Value | Units |
|------------|-------|-------|
| Pattern_p7 | None | |
| Pattern_p8 | 444.444444444444 | MilliMeter |
| Pattern_p9 | None | MilliMeter |
| Pattern_p10 | 1.0 | |
| Pattern_p11 | 10.0 | MilliMeter |
| Pattern_p12 | 0.0 | MilliMeter |
| beam_face_thickness | 20.0 | MilliMeter |
| beam_half_core_thickness | 20.0 | MilliMeter |
| beam_half_height | 250.0 | MilliMeter |
| beam_half_width | 150.0 | MilliMeter |
| beam_lenght | 5000.0 | MilliMeter |
| hole_count | 10.0 | |
| holes_diameter | 300.0 | MilliMeter |
| p4 | None | MilliMeter |
| p5 | 0.0 | MilliMeter |
| p6 | 4000.0 | MilliMeter |
| p13 | 0.0 | Degrees |
| p19 | 4000.0 | MilliMeter |
| p34 | 4000.0 | MilliMeter |
| p50 | 4000.0 | MilliMeter |
| p119 | 4000.0 | MilliMeter |
| p130 | 10.0 | |
| p132 | 444.444444444444 | MilliMeter |
| p134 | 4000.0 | MilliMeter |
| p135 | 4000.0 | MilliMeter |
| p137 | 1.0 | |
| p139 | 10.0 | MilliMeter |
| p141 | 0.0 | MilliMeter |
| p143 | 0.0 | Degrees |
| p173 | 973.968443678471 | Kilogram |
## OP2 Analysis
- **Element Types**: CQUAD4
- **Result Types**: displacement, stress
- **Subcases**: [1]
- **Nodes**: 0
- **Elements**: 0
## Baseline Performance
*No baseline results extracted*
## Configuration Proposals
### Proposed Design Variables
- **Pattern_p7**: ±20% of None
- **Pattern_p8**: ±20% of 444.444444444444 MilliMeter
- **Pattern_p9**: ±20% of None MilliMeter
- **Pattern_p10**: ±20% of 1.0
- **Pattern_p11**: ±20% of 10.0 MilliMeter
- **Pattern_p12**: ±20% of 0.0 MilliMeter
- **beam_face_thickness**: ±20% of 20.0 MilliMeter
- **beam_half_core_thickness**: ±20% of 20.0 MilliMeter
- **beam_half_height**: ±20% of 250.0 MilliMeter
- **beam_half_width**: ±20% of 150.0 MilliMeter
- **beam_lenght**: ±20% of 5000.0 MilliMeter
- **hole_count**: ±20% of 10.0
- **holes_diameter**: ±20% of 300.0 MilliMeter
- **p4**: ±20% of None MilliMeter
- **p5**: ±20% of 0.0 MilliMeter
- **p6**: ±20% of 4000.0 MilliMeter
- **p13**: ±20% of 0.0 Degrees
- **p19**: ±20% of 4000.0 MilliMeter
- **p34**: ±20% of 4000.0 MilliMeter
- **p50**: ±20% of 4000.0 MilliMeter
- **p119**: ±20% of 4000.0 MilliMeter
- **p130**: ±20% of 10.0
- **p132**: ±20% of 444.444444444444 MilliMeter
- **p134**: ±20% of 4000.0 MilliMeter
- **p135**: ±20% of 4000.0 MilliMeter
- **p137**: ±20% of 1.0
- **p139**: ±20% of 10.0 MilliMeter
- **p141**: ±20% of 0.0 MilliMeter
- **p143**: ±20% of 0.0 Degrees
- **p173**: ±20% of 973.968443678471 Kilogram
### Proposed Extractors
- **extract_displacement**: Extract displacement results from OP2 file
- **extract_solid_stress**: Extract stress from CQUAD4 elements
### Proposed Objectives
- max_displacement (minimize or maximize)
- max_von_mises (minimize for safety)

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studies/simple_beam_optimization/1_setup/benchmarking/benchmark_results.json Normal file
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{
"timestamp": "2025-11-17T11:18:28.329069",
"expressions": {
"Pattern_p7": {
"value": null,
"units": "",
"formula": "hole_count",
"type": "Number"
},
"Pattern_p8": {
"value": 444.444444444444,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"Pattern_p9": {
"value": null,
"units": "MilliMeter",
"formula": "p6",
"type": "Number"
},
"Pattern_p10": {
"value": 1.0,
"units": "",
"formula": null,
"type": "Number"
},
"Pattern_p11": {
"value": 10.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"Pattern_p12": {
"value": 0.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"beam_face_thickness": {
"value": 20.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"beam_half_core_thickness": {
"value": 20.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"beam_half_height": {
"value": 250.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"beam_half_width": {
"value": 150.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"beam_lenght": {
"value": 5000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"hole_count": {
"value": 10.0,
"units": "",
"formula": null,
"type": "Number"
},
"holes_diameter": {
"value": 300.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p4": {
"value": null,
"units": "MilliMeter",
"formula": "beam_lenght",
"type": "Number"
},
"p5": {
"value": 0.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p6": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p13": {
"value": 0.0,
"units": "Degrees",
"formula": null,
"type": "Number"
},
"p19": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p34": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p50": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p119": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p130": {
"value": 10.0,
"units": "",
"formula": null,
"type": "Number"
},
"p132": {
"value": 444.444444444444,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p134": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p135": {
"value": 4000.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p137": {
"value": 1.0,
"units": "",
"formula": null,
"type": "Number"
},
"p139": {
"value": 10.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p141": {
"value": 0.0,
"units": "MilliMeter",
"formula": null,
"type": "Number"
},
"p143": {
"value": 0.0,
"units": "Degrees",
"formula": null,
"type": "Number"
},
"p173": {
"value": 973.968443678471,
"units": "Kilogram",
"formula": null,
"type": "Number"
}
},
"expression_count": 30,
"element_types": [
"CQUAD4"
],
"result_types": [
"displacement",
"stress"
],
"subcases": [
1
],
"node_count": 0,
"element_count": 0,
"baseline_op2_path": "studies\\simple_beam_optimization\\model\\beam_sim1-solution_1.op2",
"baseline_results": {},
"simulation_works": true,
"extraction_works": true,
"validation_passed": true,
"proposed_design_variables": [
{
"parameter": "Pattern_p7",
"current_value": null,
"units": "",
"suggested_range": "\u00b120% of None "
},
{
"parameter": "Pattern_p8",
"current_value": 444.444444444444,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 444.444444444444 MilliMeter"
},
{
"parameter": "Pattern_p9",
"current_value": null,
"units": "MilliMeter",
"suggested_range": "\u00b120% of None MilliMeter"
},
{
"parameter": "Pattern_p10",
"current_value": 1.0,
"units": "",
"suggested_range": "\u00b120% of 1.0 "
},
{
"parameter": "Pattern_p11",
"current_value": 10.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 10.0 MilliMeter"
},
{
"parameter": "Pattern_p12",
"current_value": 0.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 0.0 MilliMeter"
},
{
"parameter": "beam_face_thickness",
"current_value": 20.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 20.0 MilliMeter"
},
{
"parameter": "beam_half_core_thickness",
"current_value": 20.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 20.0 MilliMeter"
},
{
"parameter": "beam_half_height",
"current_value": 250.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 250.0 MilliMeter"
},
{
"parameter": "beam_half_width",
"current_value": 150.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 150.0 MilliMeter"
},
{
"parameter": "beam_lenght",
"current_value": 5000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 5000.0 MilliMeter"
},
{
"parameter": "hole_count",
"current_value": 10.0,
"units": "",
"suggested_range": "\u00b120% of 10.0 "
},
{
"parameter": "holes_diameter",
"current_value": 300.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 300.0 MilliMeter"
},
{
"parameter": "p4",
"current_value": null,
"units": "MilliMeter",
"suggested_range": "\u00b120% of None MilliMeter"
},
{
"parameter": "p5",
"current_value": 0.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 0.0 MilliMeter"
},
{
"parameter": "p6",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p13",
"current_value": 0.0,
"units": "Degrees",
"suggested_range": "\u00b120% of 0.0 Degrees"
},
{
"parameter": "p19",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p34",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p50",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p119",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p130",
"current_value": 10.0,
"units": "",
"suggested_range": "\u00b120% of 10.0 "
},
{
"parameter": "p132",
"current_value": 444.444444444444,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 444.444444444444 MilliMeter"
},
{
"parameter": "p134",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p135",
"current_value": 4000.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 4000.0 MilliMeter"
},
{
"parameter": "p137",
"current_value": 1.0,
"units": "",
"suggested_range": "\u00b120% of 1.0 "
},
{
"parameter": "p139",
"current_value": 10.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 10.0 MilliMeter"
},
{
"parameter": "p141",
"current_value": 0.0,
"units": "MilliMeter",
"suggested_range": "\u00b120% of 0.0 MilliMeter"
},
{
"parameter": "p143",
"current_value": 0.0,
"units": "Degrees",
"suggested_range": "\u00b120% of 0.0 Degrees"
},
{
"parameter": "p173",
"current_value": 973.968443678471,
"units": "Kilogram",
"suggested_range": "\u00b120% of 973.968443678471 Kilogram"
}
],
"proposed_extractors": [
{
"action": "extract_displacement",
"description": "Extract displacement results from OP2 file",
"params": {
"result_type": "displacement"
}
},
{
"action": "extract_solid_stress",
"description": "Extract stress from CQUAD4 elements",
"params": {
"result_type": "stress",
"element_type": "cquad4"
}
}
],
"proposed_objectives": [
"max_displacement (minimize or maximize)",
"max_von_mises (minimize for safety)"
],
"warnings": [],
"errors": []
}