Anto01 6ee7d8ee12 build: Add optional dependency groups and clean up pyproject.toml ...

- Add neural optional group (torch, torch-geometric, tensorboard)
- Add gnn optional group (torch, torch-geometric)
- Add all optional group for convenience
- Remove mcp optional group (not implemented)
- Remove mcp_server from packages.find
- Update pytest coverage config

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-01-07 09:02:36 -05:00

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