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Read these on first session to fully understand the vision and architecture.
## Active Projects
- **Hydrotech Beam** — Channel: `#project-hydrotech-beam` | Phase: DOE Phase 1 complete (39/51 solved, mass NaN fixed via commit 580ed65, displacement constraint relaxed 10→20mm). Next: pull fix on dalidou, rerun DOE. **Blocked on Antoine running updated code on dalidou.**
- **Adaptive Isogrid Plate Lightweighting** — Channel: war-room-isogrid | Phase: Technical spec locked + reviews complete. Full spec (32KB) + optimizer/tech-lead/webster reviews in `shared/war-room-isogrid/`. Architecture: "Python Brain + NX Hands + Atomizer Manager". Next: CEO review → implementation planning.
- **Atomizer Project Standard** — Phase: Full review package delivered (2026-02-18). Spec (~57KB), tech-lead review, auditor audit, secretary synthesis all complete. Files in `shared/standardization/`. **Auditor verdict: spec is over-engineered — recommends Minimum Viable Standard (MVS) based on Hydrotech Beam's existing structure.** Awaiting CEO decision: adopt full spec vs MVS approach. Next: Antoine review → decision → implementation.
- **Atomizer V2 Migration** — Phase: COMPLETE (2026-02-23). 8 commits pushed to Gitea. 218+ Python files, 58 tests passing. All phases done: repo bootstrap, core engine port, integration testing, reference implementation, CLAUDE.md, Data Contracts (5 dataclasses), Pipeline-NX integration tests, roadmap for items 4-9. Dalidou validated: `import atomizer` v2.0.0 + 24/24 tests on Windows. V1 tagged `v1-final` but kept active for Antoine's current optimizations. AOM→Obsidian auto-sync via crontab (15min rsync + wiki-link conversion). Phase 6 (archive V1) deferred until Antoine switches production work.
- **Atomizer/HQ Separation** — CEO decision (2026-02-23): Atomizer = product (V2 repo), HQ = AI operations team (HQ repo). AOM governs the product. 7 AOM docs updated to reflect boundary. DEC-037 logged. HQ repo pushed to Gitea with full operational structure (218 files).
- **GigaBIT M1 — Reference Frame Stiffness** — Client: StarSpec (Adyn Miles). P04-GigaBIT-M1. Active since 2026-03-04. Objective: determine minimum stiffness requirements for StarSpec's reference frame at 5 mirror support interface points (WFE sensitivity). Hybrid B+D method, SOL 101, ~42 runs. ΔWFE budget ≤1.0 nm RMS. Project folder: `repos/Atomizer/projects/gigabit-m1-frame-stiffness/`. PKM: `obsidian-vault/2-Projects/P04-GigaBIT-M1/`.
- **P-Zernike-Validation** — V&V complete (2026-03-09). Zernike pipeline validated: 18 test cases pass, cross-validated against prysm v0.21.1 to machine precision (<1e-13 nm). Requested by Adyn Miles for risk reduction before M2/M3 ordering. Commits: `f9373be`, `075ad36`.
- **Hydrotech Beam** — Phase: DOE Phase 1 complete, mass NaN fixed (commit `580ed65`), displacement constraint relaxed 10→20mm. **Blocked on Antoine pulling fix on dalidou.** Lower priority — Antoine focused on GigaBIT M1 now.
- **Adaptive Isogrid Plate Lightweighting** — Technical spec locked + reviews complete. Awaiting CEO review.
- **Atomizer Project Standard** — Full review package delivered (2026-02-18). Awaiting CEO decision: full spec vs MVS approach.
- **Atomizer V2 Migration** — ✅ COMPLETE (2026-02-23). V1 tagged `v1-final`, kept active. Phase 6 (archive V1) deferred.
- **Atomizer/HQ Separation** — ✅ COMPLETE (2026-02-23). DEC-037 logged.
## Core Protocols
- **OP_11 — Digestion Protocol** (CEO-approved 2026-02-11): STORE → DISCARD → SORT → REPAIR → EVOLVE → SELF-DOCUMENT. Runs at phase completion, weekly heartbeat, and project close. Antoine's corrections are ground truth.

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# 2026-02-11
## Channel Config
- Added #research-and-development (C0AEB39CE5U) to Slack config
- All 6 agents bound to it
- Set `requireMention: false` globally for all Slack channels per Antoine's request
## NXOpen MCP Server — INSTALLED ✅
- **Repo**: `http://100.80.199.40:3000/Antoine/NXOpen-MCP.git`
- **Local path**: `/home/papa/atomizer/tools/nxopen-mcp/`
- **Venv**: `.venv/` with CPU-only torch (no CUDA needed)
- **Data**: 203MB pre-indexed ChromaDB + JSON caches
- 15,219 NXOpen classes, 64,320 methods
- 149 nxopentse functions
- 287 pyNastran classes
- **Run**: `./run-server.sh` or `python -m nxopen_mcp.server --data-dir ./data`
- **Protocol**: stdio-based MCP
- **Tools**: search_nxopen, get_class_info, get_method_info, get_examples, list_namespaces
- Wired into NX Expert agent via exec/Python subprocess
## NX Expert Agent — HIRED ✅
- **Agent ID**: `nx-expert`
- **Model**: Sonnet 4 (cost-effective specialist)
- **Workspace**: `/home/papa/atomizer/workspaces/nx-expert/`
- **Channels**: #hq (C0AEJV13TEU), #research-and-development (C0AEB39CE5U)
- **Mention patterns**: @nx-expert, @NX Expert, @nx, 🖥️
- **Tools**: NXOpen MCP via Python exec, atomizer-protocols skill
- **Role**: NX Open API expert, solver config, element selection, journal scripting
- First Phase 2 agent to come online — ahead of schedule

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# 2026-02-13
## Nightly Digestion Cron — LIVE ✅
- **Job ID:** `e157faf0-084f-4d8d-8693-814cf4340a48`
- **Schedule:** Every night at 4:00 AM ET (`0 4 * * *` America/Toronto)
- **Type:** Isolated agentTurn (manager), announces to #all-atomizer-hq
- **Protocol:** OP_11 full 6-step cycle (STORE → DISCARD → SORT → REPAIR → EVOLVE → SELF-DOCUMENT)
- Set up per Antoine's directive to officialize nightly memory processing
## Hydrotech Beam — Resumed
- Antoine approved continuing to next phase (~01:36 UTC)
- DOE Phase 1 (51 trials) completed previously but **gate check FAILED**:
- 39/51 solved, 12 geo-infeasible (hole overlap)
- **0 fully feasible designs** — displacement ≤10mm never achieved (min ~19.6mm)
- **Mass = NaN** on all trials — extraction bug in journal/script
- Stress constraint (≤130 MPa) met by some trials but displacement kills everything
- **Delegated to Tech Lead:** Diagnose mass NaN, analyze DOE landscape, recommend feasibility fix
- Spawned sub-agent session: `hydrotech-doe-analysis`
- **Pending CEO decision:** Relax 10mm displacement constraint? Options presented: relax to ~20mm, expand DVs, or keep and find boundary
- Optimizer + Study Builder on standby for Phase 2 (TPE) after fixes
## Mass NaN Fix — COMMITTED ✅
- **Commit:** `580ed65` on Atomizer repo main branch
- **Root cause:** `solve_simulation.py` journal's `solve_simple_workflow()` tried to read mass via expression `p173` after part switching (geom→FEM→SIM→solve→back). Expression was stale/inaccessible after switching. `_temp_mass.txt` never written.
- **NOT** the `M1_Blank` hardcoding (that's assembly workflow only). Beam uses `solve_simple_workflow` (no `.afm`).
- **Fix (2 edits):**
1. Extract mass RIGHT AFTER geometry rebuild (`DoUpdate()`) while geom part is work part — uses `MeasureManager.NewMassProperties()` (computes fresh from solid bodies)
2. Post-solve: skip re-extraction if already done; fallback to MeasureManager instead of p173
- **NX Expert** did the fix but did NOT use MCP server — was a code-level debug task, not API discovery
- **NX Expert Slack issue:** sub-agent couldn't post to #all-atomizer-hq (channel ID routing problem for spawned agents)
- **Next:** Pull on dalidou, test single trial, then re-run full DOE with 20mm constraint
## Sub-agent Issues
- Tech Lead sub-agents both hit 200K token context limit and aborted (`abortedLastRun: true`)
- Had to do diagnosis myself then delegate to NX Expert
- NX Expert also couldn't post to Slack (channel_not_found with various target formats)
- **Lesson:** Sub-agents need leaner prompts, and Slack channel routing needs fixing for spawned sessions
## DEC-HB-012 — Displacement Constraint Relaxed
- 10mm → 20mm, CEO approved (dummy case, pipeline proving)
- Updated CONTEXT.md and DECISIONS.md in project folder

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# 2026-03-20
## Nightly Digestion — OP_11 (Incremental/Weekly)
**Note:** 8-day gap since last digestion (Mar 12). No nightly logs exist for Mar 1319 — likely cron delivery issue or gateway downtime during that period.
### STORE
- **NEW PROJECT DISCOVERED:** GigaBIT M1 — Reference Frame Stiffness Characterization (P04-GigaBIT-M1). Client: StarSpec (Adyn Miles). Active since Mar 4. Antoine working directly on this. Hybrid B+D method, SOL 101, ~42 runs. ΔWFE ≤1.0 nm RMS budget.
- **Zernike V&V COMPLETE:** P-Zernike-Validation finished Mar 9. 18 test cases, prysm cross-validation to machine precision. Risk reduction for M2/M3 ordering. Commits `f9373be`, `075ad36`.
- **Tier 2 dev workflow:** Windows test runner + Syncthing result sync added Mar 7 (commit `b3162aa`).
- Updated MEMORY.md with new projects and reprioritized project list.
- Updated PROJECT_STATUS.md (was stale since Mar 3 — now current).
### DISCARD
- **Archived** `2026-02-11.md` and `2026-02-13.md` (37+ days old). Key facts preserved in archive summaries.
- **Compressed 15 idle-only daily logs** (Feb 26 Mar 12) into single archive summary (`archive/2026-02-26_to_2026-03-12_idle-period.md`). These contained only digestion-cycle boilerplate with zero substantive activity. Originals retained (not yet 30 days) but archive summary created for when they age out.
- Feb 19 hits 30-day threshold tomorrow — queued for next cycle.
### SORT
- GigaBIT M1 promoted to top of Active Projects in MEMORY.md (it's where Antoine is spending time).
- Hydrotech Beam deprioritized with note that Antoine is focused on GigaBIT now.
- Zernike V&V logged as completed project with cross-references.
### REPAIR
- **All 12 key infrastructure paths verified** ✓ (taskboard, mc-update, CLUSTER, AGENTS_REGISTRY, orchestrate tools, MCP server, protocols)
- **All 7 agent workspaces present** ✓
- **Mission Control dashboard** responding (HTTP 200) ✓
- **PROJECT_STATUS.md was 17 days stale** (last updated Mar 3) — now updated with GigaBIT M1 and current state.
- **7 Mission Control tasks stuck** in `in_progress` or `review` since mid-February — flagged for cleanup when Antoine returns to HQ work.
- **Gap identified:** Mar 1319 digestion logs missing. Cron job may have had delivery issues or gateway was down. No data loss — just missing the nightly check-ins.
### EVOLVE
- **Standing OP_11 amendment proposal** (since Mar 8, now 12 days): idle-mode rule for weekly-only digestion when no workspace changes for 7+ days. Requires CEO approval.
- **Observation:** Antoine is doing significant direct work (GigaBIT M1, Zernike V&V, dev workflow) without HQ agent involvement. The team may need to be more proactive about supporting active client work vs. waiting to be tasked.
- **Recommendation:** When Antoine next engages HQ, offer GigaBIT M1 support (Tech Lead for sensitivity analysis, Optimizer for stiffness sweep design, Webster for literature on mirror mount compliance requirements).
### SELF-DOCUMENT
- MEMORY.md updated with GigaBIT M1 project, Zernike V&V completion, and reprioritized project list.
- PROJECT_STATUS.md fully refreshed (was 17 days stale).
- No changes needed to SOUL.md, IDENTITY.md, or TOOLS.md — all still accurate.
- Agent workspace docs (other agents) not checked this cycle — no activity detected in their workspaces.

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# Archive Summary — 2026-02-11
## Key Events
- Added `#research-and-development` channel (C0AEB39CE5U) to Slack config; all 6 agents bound
- Set `requireMention: false` globally for all Slack channels per Antoine's request
## NXOpen MCP Server — INSTALLED
- **Repo**: `http://100.80.199.40:3000/Antoine/NXOpen-MCP.git`
- **Local path**: `/home/papa/atomizer/tools/nxopen-mcp/`
- **Data**: 203MB pre-indexed ChromaDB + JSON caches (15,219 NXOpen classes, 64,320 methods, 149 nxopentse functions, 287 pyNastran classes)
- **Run**: `./run-server.sh`
- **Protocol**: stdio-based MCP
- Wired into NX Expert agent via exec/Python subprocess
## NX Expert Agent — HIRED
- **Agent ID**: `nx-expert` | **Model**: Sonnet 4
- **Workspace**: `/home/papa/atomizer/workspaces/nx-expert/`
- First Phase 2 agent — ahead of schedule

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# Archive Summary — 2026-02-13
## Key Events
- **Nightly Digestion Cron LIVE** — Job `e157faf0`, 4:00 AM ET daily, isolated agentTurn (manager), announces to #all-atomizer-hq
- **Hydrotech Beam resumed** — Antoine approved Phase 2. DOE Phase 1 gate check failed: 39/51 solved, 0 fully feasible, mass=NaN on all trials
- **Mass NaN Fix committed** — `580ed65`. Root cause: `solve_simple_workflow()` tried reading mass via stale `p173` expression after part switching. Fix: extract mass right after geometry rebuild using `MeasureManager.NewMassProperties()`
- **DEC-HB-012** — Displacement constraint relaxed 10→20mm (CEO approved, dummy case)
- Sub-agent issues: Tech Lead hit 200K token limit (×2), NX Expert couldn't post to Slack (channel routing issue for spawned agents)
- **Lesson:** Sub-agents need leaner prompts; Slack channel routing broken for spawned sessions

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# Archive Summary — Idle Period: 2026-02-26 to 2026-03-12
**15 consecutive nightly digestion cycles with zero workspace activity.**
All workspaces (manager, secretary, technical-lead, optimizer, study-builder, auditor, webster) had zero file changes throughout this period. Each nightly OP_11 cycle confirmed the same state.
## Actions Taken During Period
- **Mar 8**: Archived `2026-02-08.md` and `2026-02-09.md` (30+ days old)
- **Mar 12**: Archived `2026-02-10.md` (30 days old)
- Path verifications performed nightly — all OK throughout
## Standing State (unchanged from Feb 25)
- 3 projects awaiting CEO input: Hydrotech (blocked on dalidou pull), Project Standard (MVS vs full spec decision), Isogrid (CEO review)
- Webster blocked on web_search API key (needs Mario)
- Auditor Isogrid review moot until CEO reviews spec
## EVOLVE Recommendation (first raised Mar 8)
- **OP_11 idle-mode amendment proposed**: When no workspace file changes for >7 consecutive days, switch digestion to weekly-only. Resume nightly when activity resumes. 15 consecutive near-identical cycles confirm this need.
- Requires CEO approval per protocol change rules.

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# Project Status Dashboard
Updated: 2026-03-03 04:00 AM (Nightly Digestion OP_11)
Updated: 2026-03-20 04:00 AM (Nightly Digestion OP_11)
## Active Projects
### 📦 Atomizer V2 Migration
- **Phase:** ✅ COMPLETE (2026-02-23)
- **What happened:** 8 commits pushed to Gitea. 218+ Python files, 58 tests passing. All phases done: repo bootstrap, core engine port, integration testing, reference implementation, CLAUDE.md, Data Contracts (5 dataclasses), Pipeline-NX integration tests. Dalidou validated: `import atomizer` v2.0.0 + 24/24 tests on Windows.
- **Post-migration:** Coherence audit delivered (conditional pass, 3 critical findings fixed in preflight). V1 tagged `v1-final`, kept active for current optimizations. AOM→Obsidian auto-sync via crontab. Phase 6 (archive V1) deferred until Antoine switches production work.
- **Remaining roadmap:** Items 4-9 in ROADMAP-NEXT.md (docs/dev/)
- **Location:** `192.168.86.50:3000/Antoine/Atomizer-V2`, Obsidian vault `P-Atomizer-Operating-Manual/`
- **Owner:** Manager
### 🔭 GigaBIT M1 — Reference Frame Stiffness Characterization
- **Phase:** Active — Model Setup
- **Client:** StarSpec (Adyn Miles)
- **Project ID:** P04-GigaBIT-M1
- **Created:** 2026-03-04
- **Objective:** Determine minimum stiffness requirements for StarSpec's reference frame at 5 mirror support interface points. Quantify WFE sensitivity to frame compliance.
- **Method:** Hybrid B+D (sensitivity + stiffness sweep), SOL 101, ~42 runs total
- **Key numbers:** ΔWFE budget ≤1.0 nm RMS, system allocation ≤22 nm RMS (contract), mechanical target <14 nm RMS
- **Location:** `repos/Atomizer/projects/gigabit-m1-frame-stiffness/`
- **PKM:** `obsidian-vault/2-Projects/P04-GigaBIT-M1/`
- **Owner:** Antoine (direct)
### 🏢 Atomizer/HQ Separation
- **Phase:** ✅ COMPLETE (2026-02-23)
- **Decision:** DEC-037 — Atomizer = product (V2 repo), HQ = AI operations team (HQ repo). AOM governs the product. 7 AOM docs updated. HQ repo pushed to Gitea (218 files).
- **Owner:** Manager
### ✅ P-Zernike-Validation (GigaBIT M1 Risk Reduction)
- **Phase:** ✅ COMPLETE (2026-03-09)
- **What:** Zernike pipeline V&V — 18 test cases pass, cross-validated against prysm v0.21.1 to machine precision (<1e-13 nm)
- **Commits:** `f9373be` (round-trip validation), `075ad36` (prysm cross-validation + report figures)
- **Requested by:** Adyn Miles (StarSpec) for risk reduction before M2/M3 ordering
- **Owner:** Antoine (direct)
### 🔩 Hydrotech Beam — Optimization
- **Phase:** DOE Phase 1 complete, awaiting Phase 2 (TPE)
- **Status:** ⏸️ BLOCKED — Mass NaN fix committed (580ed65), needs pull + test on dalidou
- **Key numbers:** 39/51 trials solved, 0 fully feasible (displacement), constraint relaxed to 20mm
- **Next:** Antoine pulls fix on dalidou → test single trial → rerun DOE → Phase 2 TPE
- **Note:** Lower priority — Antoine focused on GigaBIT M1 work
- **Owner:** Tech Lead + Study Builder
### 📐 Atomizer Project Standard
@@ -39,19 +46,27 @@ Updated: 2026-03-03 04:00 AM (Nightly Digestion OP_11)
- **Next:** CEO review → implementation planning
- **Owner:** Manager / Tech Lead
### 🔬 Material Research (M2 Mirror Trade Study)
- **Phase:** Research complete
- **Status:** ✅ Data collected (Zerodur, Clearceram-Z HS, Invar 36, SiC)
- **Next:** Awaiting project context to produce recommendation
- **Owner:** Webster
### 📦 Atomizer V2 Migration
- **Phase:** ✅ COMPLETE (2026-02-23)
- **Post-migration:** V1 tagged `v1-final`, kept active. AOM→Obsidian auto-sync via crontab. Phase 6 (archive V1) deferred until Antoine switches production work.
- **Remaining roadmap:** Items 4-9 in ROADMAP-NEXT.md
### 🏢 Atomizer/HQ Separation
- **Phase:** ✅ COMPLETE (2026-02-23)
- **Decision:** DEC-037
## Infrastructure Updates
- **Tier 2 dev workflow** added (2026-03-07, commit `b3162aa`): Windows test runner (`run_tests.bat`), result sync via Syncthing, JSON result capture, `--quick` mode for NX-independent tests
- **Daily HQ syncs** continue (automated commits through Mar 12)
## Outstanding Blockers
- **Auditor** blocked on P-Adaptive-Isogrid review since Feb 16 (11 days — chronic, moot until CEO reviews Isogrid; closing next active session)
- **Webster** web_search API key missing (needs Mario, since Feb 19 — 8 days)
- **3 projects** simultaneously awaiting CEO input — triage needed when Antoine returns
- **3 projects** awaiting CEO input (Hydrotech, Project Standard, Isogrid) — deprioritized while Antoine focuses on GigaBIT M1
- **Webster** web_search API key still missing (needs Mario, since Feb 19)
## Recent Activity
- 2026-02-24: **Arsenal Development Plan** — Tech Lead produced dev blueprint (multi-solver expansion, 6-sprint roadmap). Auditor delivered risk analysis + quality gates (flagged 5 simultaneous problem streams, recommended phased de-risking). Good team output.
- 2026-02-23: V2 Migration COMPLETE (8 commits, 218+ files, 58 tests). HQ Separation COMPLETE (DEC-037). Coherence audit + preflight fixes delivered.
- 2026-02-22: AOM 100% complete (48 docs), tool-agnostic architecture
- 2026-02-18: Project standardization package assembled and reviewed
## Mission Control — Stale Tasks
Several MC tasks have been in `in_progress` or `review` since mid-February with no updates:
- ATZ-2f1634: P-Adaptive-Isogrid (in_progress)
- ATZ-74f02a: Atomizer Overhaul (in_progress)
- ATZ-839392: Project Standard — Introspection (in_progress)
- ATZ-749aac, ATZ-d3fce9, ATZ-05c017, ATZ-21695d: all in review
These should be resolved (completed or closed) when Antoine returns to HQ work.